Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00246 ATGGCACGGGGGAGGATCAGAGCAAGGATCCGAAGGAGCCATCTTTACACATTTGGTGGTTGCCTGAGGCCAACTACCACTGAGGAGGTGCCTCATCCCCTTCAAGGTCCGGGATACTCGCGAACAGTATACTGCAACCAGCCTCAACTCCTTGAAAAGAATTCTCTATTTTACTGCAAGAATGATGTATCAACCACCAAATACAATGTCATCACGTTTTTCCCTAAGGCACTGTTTGAGCAATTTCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTTTCGGCGTCTCCAATTTCACCTTTCAGCCCACTAAGCATGATTGCTCCTTTGGCGTTTGTTGTGGGGCTGAGTATGGCAAAGGAGGCATTGGAGGATTCGCGCAGGTTCTTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTAGTCTCCATAAAGGCAATGGCATTTTTGGTCTCAGGTCGTGGCAGAAGATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGGCGTCAAGTTATGAAGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACAAACTTGAAGGTGAAGAGATCTTTGGAGGCTACCTTGTCTCTGGATAATGATGGGGCTTTTAAGGATTTCTCTGGAACAATACGTTGTGAAGATCCCAATCCTGATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACATCAAGTTTATCCTCTTGATCCTGGCCAAATTCTTCTCCGTGATTCAAAGCTTAGGAACACTGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACCAAATCCCCTTCAAAAAGAAGCACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATCGATATCTTTTATTAGTTCAATAGGATTTGTTGCAAAGACCAAATACCAAACCCCAAAGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTTTGATCCTGGTAAACTTGGATTGGCTGGGATGAGCCATCTGATCACTGCACTCATTCTTTATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGTTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAATCTGGGACTCCAGCTGAAGCACGAACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTATCTGATAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTTTGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCAGGAATTGGATCTCTCTAATTTCCCCATGCGTAAGGAGAGTAACGTGCAATGGGAAAATATCACAGAAGATGAAGAAACTGAACTGGGGACTGTTGTTACTTCCAGGGATGATGGAGCTCGTAGGCCTGccataaagggatttggttttgaagatgaccgccttatgaatggtaattggttgaaagaacccaatgccgatgtccttttgctgtttttccggatattagcagtttgccatacagccattcctgaactgaatgaggagactgacagttgtacatatgaagccgaatcacctgatgaaggggcttttctagtagcagcaagagaatttggttttgaattttataggagaactcaatcaagtgttgtccttcgtgaaAGATTTTTTGCTTTGGGTCAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGACTTTACTAGCAAAAGAAAGCGCATGTCAGTCATTGTGCGTGATGAGGAGGGAAACATCATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTGTTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTAGCCCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAACAACGAGTTTCAGAAGGCCAAGACAGCTGTTGGGTCTGAGAGAGAGGCAATGCTTGAGCAGGTTTCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCAGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACAGCAATCAACATTGGATTCGCTTGTAGTTTACTTCGACAGGGCATGAAGCAAATCTGTATCACAATGAATTCAGATTCTGTAACTAATGATGGGAAAGAGGTCATCAAAGGCAACATCTTGAGTCAAATCACCAATGCTTCACAAATGATAAAGCTGGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGGCTGTTGGTTGTGCATCTGTTATTTGCTGTCGTGTGTCTCCGAAGCAAAAAGCATTGgtaacaaggttagtgaaagaaggaactgggaaaaccactttagccataggtgatggtgcaaatgatgttggcatgattcaagaagctgacattggtgttggaatcagtggggttgaaggtatgcaggcagtaatggctagtgactttgctattgcccaattccggtttttggagcggcttctggttgtccatggacactggtgctaCAAGAGAATTGCACAAATGatctgttatttcttctacaaaaatatagcatttggcctcacaatattatattttgaggcctttgcgggcttctctggacaatcggtttatgatgactggtacatgatattgttcaatgtttttcttacatcattgcctgtcatttctcttggagtttttgaacaagatgttccatcagaagtttgcttacagTTTCCTGCATTGTATCAGCAAGGACCCAAAAATTTGTtctttgactgGGAGCGGTCTAAAGCAAGGCAGGTAACTAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCATTTTAAAGGCAAGCTGCAGAAGAAGCAACAGTCTTCACTGGGGGCTTTGTCCCCATCATGA 3186 0.3343 MARGRIRARIRRSHLYTFGGCLRPTTTEEVPHPLQGPGYSRTVYCNQPQLLEKNSLFYCKNDVSTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFFQDVKVNRRKASLHKGNGIFGLRSWQKIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPDLYTFVGNFEYEHQVYPLDPGQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLISISFISSIGFVAKTKYQTPKWWYLRPDNIEYQFDPGKLGLAGMSHLITALILYGYLIPISLYVSIEFVKVLQATFINQDIQMYDDESGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVCSSEVELAAAKQMASDLEEQELDLSNFPMRKESNVQWENITEDEETELGTVVTSRDDGARRPAIKGFGFEDDRLMNGNWLKEPNADVLLLFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVLRERFFALGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSKNGKMCLEATTRHLNEYGEAGLRTLALAYRKLDDQEYSDWNNEFQKAKTAVGSEREAMLEQVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITMNSDSVTNDGKEVIKGNILSQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTILYFEAFAGFSGQSVYDDWYMILFNVFLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWERSKARQVTKIGFTARVEAKIRHFKGKLQKKQQSSLGALSPS 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00246 1061 Gene3D - 116 289 - -
Gma15g00246 1061 Pfam Cation transport ATPase (P-type) 546 651 - -
Gma15g00246 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 687 IPR023299 GO:0000166
Gma15g00246 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1008 IPR023298 -
Gma15g00246 1061 SFLD C1.7: P-type atpase like 405 931 - -
Gma15g00246 1061 Gene3D - 720 920 IPR023214 -
Gma15g00246 1061 Gene3D - 578 701 IPR023299 GO:0000166
Gma15g00246 1061 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 846 961 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma15g00246 1061 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 1021 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gma15g00246 1061 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Gma15g00246 1061 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Gma15g00246 1061 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1021 - -
Gma15g00246 1061 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1020 1052 - -
Gma15g00246 1061 SUPERFAMILY Calcium ATPase, transduction domain A 149 287 IPR008250 -
Gma15g00246 1061 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Gma15g00246 1061 SFLD p-type atpase 405 931 IPR044492 -
Gma15g00246 1061 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1021 IPR032630 -
Gma15g00246 1061 SUPERFAMILY HAD-like 411 924 IPR036412 -
Gma15g00246 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Gma15g00246 1061 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1021 - -
Gma15g00246 1061 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1020 1052 - -
Gma15g00246 1061 CDD P-type_ATPase_APLT_Dnf-like 61 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00246 Gma-Chr15 2144261 2150053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00246 1020 1053 Primary Pumps ATPases AT1G17500 70.588 1.69e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00246 K01530 - gmx:100792942 2016.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03119 13 45373391 45379705 Gma15g00246 15 2144261 2150053 GST
Gma15g00246 15 2144261 2150053 Gma07g00071 07 574254 579663 PCT
Gma15g00246 15 2144261 2150053 Gma08g01754 08 15611710 15617478 PCT
Gma07g00071 07 574254 579663 Gma15g00246 15 2144261 2150053 PCT
Gma08g01754 08 15611710 15617478 Gma15g00246 15 2144261 2150053 PCT