Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00232 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCATCTTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAACAATACTTTGCTCCACCACTAAGTCAAGCACAGCCTCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGACTCTCTTGGCAACTAATAGGTTCATTTGTGAGATCTGCAACAAGGGATTTCAAAGAGACCAGAATCTCCAACTTCACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGATCAAGCAACGAGATTATAAGGAAGAAGGTGTATGTGTGCCCAGAAGCCAGTTGCGTGCACCACGACCCTTCAAGGGCTCTTGGGGACCTCACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGACAAATGCTCCAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTTCAAGATCAGTGACAGGCATAGGCATAGTAGCCAACTCAACTTCAACTCAACCAACTGCAGCAGCAGCCTCTCATCAACAAGACATCATCCATGGTAATAGTAACAATTTCCCATTGAAGAAAGAGCAACAAGCAGGTTTCAGACCACCTTGGATTGGACAACCATCACCCTCTTCTGCTTCATCATTCTTGGTCTCTCATCAAGAAAACCCTAACCCTAGAGGTGGTGGTCCTGGTCCCACTCTTCTTCCTCCTTACCAAACAGCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCATCCCAAATGGGTGCGACGATGAGCAAAACCGGGTCCATGATTGGGACCCACCAACAACAGGCTCACGTGTCTGCCAATGCCGCTTTGAATTTGTCCTCACGTGACCACCAGATGACCCCCACTCTCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGCTGTTGGTAATGGTGTTTCTCCTTCACTCCTTCACCATATCATCGACTCTTTCTCTTCACCCTTTGAAGGGACTTCTTTTGAGGACACTTTTGGTGGTGCTGGTGGCGATGCCATGACGAAAACAACCACCGCCGATGACGGTGCCAGAGGAAACAATAATGAAGCCCTGACAAGAGATTTCTTGGGTCTTAGACCTCTCTCTCACACTGATATCCTCAACATTGCTGGTATGGGAAGTTGCATCAACTCCTCCCAACATAACCAAACCCCAAACCCTTGGCAAGGTTAG 1368 0.4803 MSNLTSASGEASASSGNRTEIGTDYSQQYFAPPLSQAQPPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSNEIIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRSVTGIGIVANSTSTQPTAAAASHQQDIIHGNSNNFPLKKEQQAGFRPPWIGQPSPSSASSFLVSHQENPNPRGGGPGPTLLPPYQTAPHMSATALLQKASQMGATMSKTGSMIGTHQQQAHVSANAALNLSSRDHQMTPTLHGLVPFGNKAVPAVGNGVSPSLLHHIIDSFSSPFEGTSFEDTFGGAGGDAMTKTTTADDGARGNNNEALTRDFLGLRPLSHTDILNIAGMGSCINSSQHNQTPNPWQG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00232 455 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 439 - -
Gma15g00232 455 Gene3D Classic Zinc Finger 51 121 - -
Gma15g00232 455 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Gma15g00232 455 MobiDBLite consensus disorder prediction 260 279 - -
Gma15g00232 455 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Gma15g00232 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Gma15g00232 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 439 - -
Gma15g00232 455 SMART c2h2final6 114 144 IPR013087 -
Gma15g00232 455 SMART c2h2final6 72 94 IPR013087 -
Gma15g00232 455 SMART c2h2final6 149 169 IPR013087 -
Gma15g00232 455 MobiDBLite consensus disorder prediction 1 33 - -
Gma15g00232 455 MobiDBLite consensus disorder prediction 1 44 - -
Gma15g00232 455 Gene3D Classic Zinc Finger 127 206 - -
Gma15g00232 455 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00232 Gma-Chr15 2028618 2031597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00232 1 444 IDZ Gene Family AT1G55110 49.167 5.13e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma15g00232 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00232 K25870 - gmx:100820609 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03133 13 45484702 45487500 Gma15g00232 15 2028618 2031597 GST
Gma15g00232 15 2028618 2031597 Gma07g00084 07 693425 696474 PCT
Gma15g00232 15 2028618 2031597 Gma08g01775 08 15791393 15796765 PCT
Gma07g00084 07 693425 696474 Gma15g00232 15 2028618 2031597 PCT
Gma08g01775 08 15791393 15796765 Gma15g00232 15 2028618 2031597 PCT