Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00208 ATGGATGGTCTAAGTTGGGATGCCTCATCACAACTTGTTGCTAACACACCGGTCTTGTGGAGCACTCAGTCTCAAGACCTTGAAGGAGACTATCATCATTCCATGCCCCACCTAAGTTCAAGTGTTCTGAATAATCAAACAGGCTATGCATATCCCAGTTCTGAAAAGGCGAGGGGCATGGTTCAGTTATCCACTATGTCTGAGATAATGAGTATGATGCCAAACACAAATCTGCCACAAAGAATTACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGAAGAGGCTTTAATATCCCAATCATGCCCATCCCTTTCGGTGAATATGAACCAAACTAGCAATTATGTAGCAGATCTCAACAAGGCCCACCAGCAACAACAACAGCTTATCAATGGCACACAAAACGGCAAGGCTACTACCTGCTCTCTTGATCAGTCAATTGATTGCTTGCTTTCAGCTACTAATAATAGCAACACAGACGCGTCTGTCGAAGATGATGGGATTTCGATGATTCTCTCTGACTGCAGAAACCTATGGAATAACTTCAGTTATGGCAGTGCAGCTTCCTCTGGTGAATCTGATAGCAATGCTTCCATTAATGCTAGAAACAGTGACATGCGGTATCCATCAGTCAGTGAGCTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGGAAGAGTGATAGATTCTGAAGTTATTTGCACAAAAAGGAGCAGTAGTTCATGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAAGGTGGTTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGATTCATAAGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGACACCTTCCTTTGAAGAACCTGATCCTGAGGTCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTTGAAGCGGTGGAAAAGCCAAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACAGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCAGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTGGAAAATCTAGGCAATAAGCTTGACACAATGAATTGTCCTCCCACTAACATAGACTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATATTCCAAGGGTTGA 1338 0.438 MDGLSWDASSQLVANTPVLWSTQSQDLEGDYHHSMPHLSSSVLNNQTGYAYPSSEKARGMVQLSTMSEIMSMMPNTNLPQRITATMPVKSGAAGASWEEALISQSCPSLSVNMNQTSNYVADLNKAHQQQQQLINGTQNGKATTCSLDQSIDCLLSATNNSNTDASVEDDGISMILSDCRNLWNNFSYGSAASSGESDSNASINARNSDMRYPSVSELDESVSQSFSDQYLSQGRVIDSEVICTKRSSSSCFSIAQNSSATEGGFRLISETSPKSKRPRWIHKHPGSSNINFQQPNSSVTPSFEEPDPEVIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIDFSFNPSFPIQTHFPIQNPSSHIQYSKG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00208 445 Coils Coil 383 403 - -
Gma15g00208 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 409 IPR036638 GO:0046983
Gma15g00208 445 MobiDBLite consensus disorder prediction 271 304 - -
Gma15g00208 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Gma15g00208 445 SMART finulus 350 399 IPR011598 GO:0046983
Gma15g00208 445 MobiDBLite consensus disorder prediction 286 303 - -
Gma15g00208 445 PANTHER TRANSCRIPTION FACTOR BHLH87 1 442 - -
Gma15g00208 445 Pfam Helix-loop-helix DNA-binding domain 354 393 IPR011598 GO:0046983
Gma15g00208 445 Gene3D - 349 412 IPR036638 GO:0046983
Gma15g00208 445 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 442 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00208 Gma-Chr15 1795858 1797195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00208 111 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.795 6.02e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma15g00208 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00208 - - gmx:100793830 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00208 15 1795858 1797195 Gma15g00208 15 1795858 1797195 ECH
Gma13g03159 13 45714516 45716483 Gma15g00208 15 1795858 1797195 GST
Gma15g00208 15 1795858 1797195 Gma07g00127 07 1078402 1080274 PCT
Gma15g00208 15 1795858 1797195 Gma08g01824 08 16278854 16280847 PCT
Gma07g00127 07 1078402 1080274 Gma15g00208 15 1795858 1797195 PCT
Gma08g01824 08 16278854 16280847 Gma15g00208 15 1795858 1797195 PCT