Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00200 ATGTCTTGGCAAAGCTACGTGGATGACCACCTCATGTGCGATTTCGATGGCCACGCCCTCGCGGCTGCCGCCATCATCGGCCACGACGGCACTGTCTGGGCACAAAGCTCCAAATTTCCTCAGTTTAAGGGTGAAGAAATTGTAGCCATCATGAAAGATTTTGACGAACCTGGCAGCCTTGCTCCAACGGGCTTGCACCTCGGTGATACTAAGTACATGGTCATCCAAGGTGAACCTGGAGCTGTTATTCGCGGCAAGAAGGGTGCTGGTGGGGTCACTGTTAAAAAAACTAATCAAGCTCTGGTAATTGGTATCTATGAGGAACCTCTGACCCCAGGACAGTGCAACATGATCGTTGAGAGGTCCTTGGTCAAAGATGATTACGATCCAGAGGAGATCAAGGACTTGTTTAGGCGAGCGTTTTCACTAAAGCATCTAATGGTGCATTAG 450 0.4956 MSWQSYVDDHLMCDFDGHALAAAAIIGHDGTVWAQSSKFPQFKGEEIVAIMKDFDEPGSLAPTGLHLGDTKYMVIQGEPGAVIRGKKGAGGVTVKKTNQALVIGIYEEPLTPGQCNMIVERSLVKDDYDPEEIKDLFRRAFSLKHLMVH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00200 149 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Gma15g00200 149 PANTHER PROFILIN-A 1 121 - -
Gma15g00200 149 CDD PROF 2 121 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Gma15g00200 149 SMART prof_2 1 128 IPR005455 GO:0003779
Gma15g00200 149 Gene3D Dynein light chain 2a, cytoplasmic 1 124 - -
Gma15g00200 149 PANTHER PROFILIN 1 121 IPR005455 GO:0003779
Gma15g00200 149 Pfam Profilin 1 121 IPR005455 GO:0003779
Gma15g00200 149 SUPERFAMILY Profilin (actin-binding protein) 2 121 IPR036140 -
Gma15g00200 149 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Gma15g00200 149 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00200 Gma-Chr15 1633438 1634920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00200 1 121 Cytoskeleton Gene Families AT4G29340 75.000 7.24e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00200 K05759 - gmx:100809393 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00311 08 2661429 2662527 Gma15g00200 15 1633438 1634920 ECH
Gma05g02197 05 43079457 43087061 Gma15g00200 15 1633438 1634920 ECH
Gma15g00200 15 1633438 1634920 Gma15g00200 15 1633438 1634920 ECH