Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00194 ATGAATCTTATACAAAACCTCCCTTTAAGGTTGCTACCACACTTGTACATCTTTCTGCTTCATCTTTATTGTACAAGTTCTTATCCCACACCCATGAACTGCACCGACACAACTCGTGTTTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAACCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACCGTTGAAGGCAATGGCTGGGATTACATATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACTCTCACTGTGAAATCCAATGGAGGTTTTGAGCATGATTTGGTGATGGATGCCTATGATGGGCTTGCTCTCTTGCCAAACACGACGACGCGTTGGGCAAGAGAAGGCGGTGTCATATCTCTGAGCTTGTTCTGTAGTTGTTCCAGTGGACTGTGGAACTATCTAATGAGCTATGTCATCAGAGATGGGGACAGTGTTGAATCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAACATTGAGACAGTGAATGCCATTGACAATCCTGATAGCCTCACTGTTGGTTCTCTCTATTATATACCTTTGAATTCGGTTCCCGGTGAGCTTTACCACTTGAAGAATGATACTCCATCAGCTCCAATCCCTTCGCCATCTGTTGATAATTTTTCAGCTGACCATGTGACCCAGAAGGCTCATGTACCCCATGAGTGGATCGTAGGAGGTTTAGGGATTGGTCTTGCTCTGATAATATTAACCATTATTGTGTGGGTGGCCCTGAGATCACCCAATTGTTTGGTTGAAGCCAGAAATAATGCAAAAGATTCTGCTGGGAAGATCTCTAAGAAGTTCTATGTCTTTGGGAATCCAAGTTTGTTTTGTGGATGTGGCAAACCTGTGGACCAACATCAAACTTATGGTGAATCCAGTAGTCACCAAATTACCGTTACCAAAGCATCAACTCTAATGCCTGACATGTTGGACATGGATAAGCCTGTAGTTTTTTCATATGAAGAAACTTTTTCTTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCGCAGAACATATGGCTCTGTTTACCATGGGCTCCTCCGTGACCAGGAAGTTGCTATTAAAAGACTGACAACTACTAAAACTAAAGAATTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGTTAGTCATGATGAATTTTTCCTTATTTATGAATTTGCTCAGAGAGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAGTAAGGGTTATTCACCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGTTACGTCCATCAAGATATCAAGACAAGCAACATTTTCCTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTAGGTGAAACAAATGAGGGAGAAATCGCAGCAACCAAAGTTGTAAATGCATATGGATATCTTGCTCCAGAATACTTGAGCAATGGTCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCGGGGAAGGAGGCCATAATTCAAACACAAGGCCCTGAAAAACGATCATTGGCATCTATTATGTTGGCAGTTCTTAGGAACTCACCTGATACCGTGAGCATGTCAAGCACGAGAAACCTCGTTGATCCTATTATGATGGATCTATATCCCCATGATTGTGTGTATAAGATGGCCATGCTGGCAAAGCAATGTGTGGATGAGGATCCTGTATTACGCCCTGATATGAAACAAGTTGTGATTTTCCTATCACAAATCCTGTTGTCTTCTGTTGAGTGGGAAGCGACTCTTGCTGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 1971 0.4242 MNLIQNLPLRLLPHLYIFLLHLYCTSSYPTPMNCTDTTRVCTSFLAFKPQPNQTLAVIQSMFDVLPGEITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGFEHDLVMDAYDGLALLPNTTTRWAREGGVISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDNIETVNAIDNPDSLTVGSLYYIPLNSVPGELYHLKNDTPSAPIPSPSVDNFSADHVTQKAHVPHEWIVGGLGIGLALIILTIIVWVALRSPNCLVEARNNAKDSAGKISKKFYVFGNPSLFCGCGKPVDQHQTYGESSSHQITVTKASTLMPDMLDMDKPVVFSYEETFSSTDGFSDSNLLGRRTYGSVYHGLLRDQEVAIKRLTTTKTKEFMSEIKVLCKVHHANLVELIGYAVSHDEFFLIYEFAQRGSLSSHLHDPQSKGYSPLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNIFLDASFRAKISDFGLAKLVGETNEGEIAATKVVNAYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKEAIIQTQGPEKRSLASIMLAVLRNSPDTVSMSSTRNLVDPIMMDLYPHDCVYKMAMLAKQCVDEDPVLRPDMKQVVIFLSQILLSSVEWEATLAGNSQVFSGLVQGR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00194 656 PANTHER BNAA06G02020D PROTEIN 32 656 - -
Gma15g00194 656 Pfam LysM domain 156 193 IPR018392 -
Gma15g00194 656 Pfam Protein tyrosine and serine/threonine kinase 356 626 IPR001245 GO:0004672|GO:0006468
Gma15g00194 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Gma15g00194 656 Gene3D Transferase(Phosphotransferase) domain 1 424 643 - -
Gma15g00194 656 SUPERFAMILY LysM domain 154 199 IPR036779 -
Gma15g00194 656 SMART serkin_6 351 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00194 656 CDD LysM 155 198 IPR018392 -
Gma15g00194 656 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 656 IPR044812 GO:0019199|GO:0045087
Gma15g00194 656 Gene3D Phosphorylase Kinase; domain 1 323 422 - -
Gma15g00194 656 Gene3D LysM domain 151 206 IPR036779 -
Gma15g00194 656 ProSiteProfiles Protein kinase domain profile. 351 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00194 656 SMART LysM_2 155 199 IPR018392 -
Gma15g00194 656 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
Gma15g00194 656 SUPERFAMILY Protein kinase-like (PK-like) 327 628 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00194 Gma-Chr15 1570251 1575530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00194 31 656 Receptor kinase-like Gene Family AT1G51940 62.422 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gma15g00194 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00194 - - gmx:100789067 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00194 15 1570251 1575530 Gma15g00194 15 1570251 1575530 ECH
Gma13g03172 13 45847306 45853398 Gma15g00194 15 1570251 1575530 GST
Gma15g00194 15 1570251 1575530 Gma07g00145 07 1236000 1242184 PCT
Gma15g00194 15 1570251 1575530 Gma08g01842 08 16537315 16544168 PCT
Gma07g00145 07 1236000 1242184 Gma15g00194 15 1570251 1575530 PCT
Gma08g01842 08 16537315 16544168 Gma15g00194 15 1570251 1575530 PCT