Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00126 ATGGATGTTACTTCCCTGGGTTCAAATAGCAATACCCAAACCGACCAACACCCTTTGTTGATGGAGCAGCCAGAAACCCATAACGGTCATCAGCATGTAATTGACATTACAAGGAATGGTGAAGCTCTAACTACGTCATCTCGTAATGATCAATACTCTGAAATGCATTTACCACAGAATGAAGATCAAGCAGCTGGGGATGCACAAAATTCCAGTCATCAAACATCATCATCTTCTGCACCCAGATTAAACTCTAGAAATTCAGCTTCATTGAGAAGAGGTGAGGGATATGGTCATCATGGAAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATCGTCGTTTTGTCATTGTCCAGGAATGAAAATCCCCAGGCCCCATTATTTGCATGGATTGTGGGCTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATACCTCTCAAGCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTTCTTATAATTCCATCCATGTTTCTCATGTCTCAGATGAGGAGAATGGTCATGCTACACGATCAGCCTCAAGAAACACTATAATGCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCCTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTTTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCTCAGAATAGAGGAGCAACAGTAGAATCAATTAATGCGTTACCGATATTCAAGTTCAAATTGAAGAACAATGAAAATGGTGATGACCAGGATGTCAATGCAGCTATAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACTTTTTCCACGTAATGTGTGTTGACAAATGGTTAAAGATAAATGCAACCTGCCCTCTTTGTAAAAACGAAGTTGGTACGAGTAATGGAGGGTCCCCTTCAGCCTGGAACTCCAGTACGTAG 1275 0.4157 MDVTSLGSNSNTQTDQHPLLMEQPETHNGHQHVIDITRNGEALTTSSRNDQYSEMHLPQNEDQAAGDAQNSSHQTSSSSAPRLNSRNSASLRRGEGYGHHGRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDTSQASQGSSGSNPPDRSYNSIHVSHVSDEENGHATRSASRNTIMPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDVNAAIDEGGILAAGTEKERMISGEDAVCCICLAKYADDDELRELPCSHFFHVMCVDKWLKINATCPLCKNEVGTSNGGSPSAWNSST 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00126 424 CDD RING-H2_RNF111_like 364 406 - -
Gma15g00126 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 420 - -
Gma15g00126 424 MobiDBLite consensus disorder prediction 60 91 - -
Gma15g00126 424 SUPERFAMILY RING/U-box 357 412 - -
Gma15g00126 424 MobiDBLite consensus disorder prediction 60 103 - -
Gma15g00126 424 PANTHER PROTEIN, PUTATIVE-RELATED 1 420 - -
Gma15g00126 424 SMART ringv_2 364 406 IPR011016 GO:0008270
Gma15g00126 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Gma15g00126 424 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Gma15g00126 424 SMART ring_2 365 405 IPR001841 -
Gma15g00126 424 MobiDBLite consensus disorder prediction 170 193 - -
Gma15g00126 424 Pfam Ring finger domain 365 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00126 Gma-Chr15 1047172 1051866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00126 1 416 C3H Transcription Factor Family AT1G80400 58.057 1.06e-171 485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00126 15 1047172 1051866 Gma15g00126 15 1047172 1051866 ECH
Gma13g03229 13 46363743 46368461 Gma15g00126 15 1047172 1051866 GST