Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00121 ATGAGTGGGCTGAAAGAGCACCTTAAACTGGCAAGAGAATACGCGGTGGAAGGGCTCTACGACACCTCCGTGATCTTCTTCGACAACGCCGTTGCACAGATCAACAAGCACCTTAACAGCAACAGCGTGGAGGACCCTTTGGTGCGAGCCAAATGGATGAAGGTGAAGAAAGCGCTGTGCGAGGAAACGGAAGTGGTGAAGCAGCTAGATGCTGAGAGAAGGGCGTTTAAGGAAACAACACGATCGCCATCTCAATCCTCGTCCTTTGTTTTTCAACCCTTGGATAACTATCCCACTACCTCTCCTCCTCCTCCTCCTCCTCCTCATGATCCCGACGTCTGGAGGCCGCCCAGTCCAGACGATGCCAGAAGGCCCACCAGGCCCACTGCTCGCAGCAAAGATGGGGCTTGGGCTGCCCGAGGTTCAGCCAGGCCCGCCCCTCGTGCCGCAAAGCCCAACAGCAGGGTCAGCACAGGAACAGGAAAGAAAGGAAAGGATAATAATAAGTATGAAGGCCCTGATGGTGAGTTGGCGGAAATGCTAGAAAGGGATGTGTTGGAAACGTCCCCTGCTGTCAGATGGGATGATGTTGCAGGCCTCACTCAAGCCAAAAGCCTTCTAGAAGAAGCCCTTGTACTTCCCTTATGGATGCCTGAATATTTCCAGGGAATAAGGAGACCCTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTCAACGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTCCGGTGCTTGTTTGATCTTGCAAGAGCATATGCCCCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGCTTGATGGTGTAAATAATAGTTCCACAAATGAAGATGGTACCCGCAAAATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGgagaagattggaaaagcgtatatacattcctcttccaaattttgagagtcgaaaagagctgatccgtATCAATTTGAGGACTGTAGAGGTGTCCCCTGATGTGAACATAGATGAAGTGGCTCGAAGGACAGAGGGGTATAGTGGAGATGACTTGACAAATGTATGTCGTGATGCTTCTCTGAATGGTATGAGGCGTAAGATAGCCGGAAAAACGCGTGATGAGATCAAGAACATGTCCAAGGATGAGATTTCTAAGGACCCAGTTGCAATGTGTGATTTTGAAGCAGCTTTGAAGAAAGTCCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTATGCCGAATTTGGATCAGCATAA 1440 0.4688 MSGLKEHLKLAREYAVEGLYDTSVIFFDNAVAQINKHLNSNSVEDPLVRAKWMKVKKALCEETEVVKQLDAERRAFKETTRSPSQSSSFVFQPLDNYPTTSPPPPPPPHDPDVWRPPSPDDARRPTRPTARSKDGAWAARGSARPAPRAAKPNSRVSTGTGKKGKDNNKYEGPDGELAEMLERDVLETSPAVRWDDVAGLTQAKSLLEEALVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQLDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLRTVEVSPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEAALKKVQPSVSQADIERHEKWYAEFGSA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00121 479 Pfam Vps4 C terminal oligomerisation domain 432 477 IPR015415 -
Gma15g00121 479 CDD AAA 225 368 - -
Gma15g00121 479 PANTHER AAA DOMAIN-CONTAINING 2 479 - -
Gma15g00121 479 Gene3D - 189 470 IPR027417 -
Gma15g00121 479 MobiDBLite consensus disorder prediction 99 174 - -
Gma15g00121 479 Gene3D - 369 455 - -
Gma15g00121 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 476 IPR027417 -
Gma15g00121 479 Pfam ATPase family associated with various cellular activities (AAA) 231 368 IPR003959 GO:0005524|GO:0016887
Gma15g00121 479 MobiDBLite consensus disorder prediction 99 113 - -
Gma15g00121 479 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 2 479 - -
Gma15g00121 479 SMART AAA_5 227 370 IPR003593 -
Gma15g00121 479 MobiDBLite consensus disorder prediction 114 130 - -
Gma15g00121 479 ProSitePatterns AAA-protein family signature. 340 359 IPR003960 GO:0005524|GO:0016887
Gma15g00121 479 Gene3D - 1 77 - -
Gma15g00121 479 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 2 479 IPR028596 GO:0008017|GO:0008568|GO:0051013
Gma15g00121 479 Pfam AAA+ lid domain 390 431 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00121 Gma-Chr15 991961 995309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00121 183 460 Calmodulin-binding Proteins AT3G56690 39.362 5.86e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00121 K07767 - gmx:100801219 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00121 15 991961 995309 Gma15g00121 15 991961 995309 ECH
Gma13g03234 13 46411832 46413681 Gma15g00121 15 991961 995309 GST
Gma15g00121 15 991961 995309 Gma07g00319 07 2708291 2712312 PCT
Gma15g00121 15 991961 995309 Gma08g01905 08 17155805 17159947 PCT
Gma07g00319 07 2708291 2712312 Gma15g00121 15 991961 995309 PCT
Gma08g01905 08 17155805 17159947 Gma15g00121 15 991961 995309 PCT