Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00072 ATGGCTTTTTGCCCAATTTTTTGTTGCGGAAATAGTTCGGATCGCAAAGGACGAGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACACTCCGCTACAAATAATTTCAACTATGATAACAAGCTCGGCGAAGGGGGATTCGGCAGTGTGTACTGGGGCCAGCTCTGGGATGGATCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCTAGAGTACGACACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATTGTTTATGATTATATGCCTAATTTGAGCCTGCTCTCTCATCTTCATGGACAGCACTCAGCAGAATCCCTTCTTGATTGGAACCGGCGGATGAATATCGCAATTGGGTCTGCTGAGGGAATTGGATATCTCCACAACCAGTCAATGCCACATATCATCcacagagatatcaaggcaagcaacgtgttgttggattcggattttcaggcacagAGTCAGCCAGAGAAGAGACCCACCATACTTGAGGTGGTAGAGCTACTGAAGGGAGAATCCAAAGATAAGTTAGCCCAACTGGAAAATAATGAACTCTTTAAGAACCCTCCAGCTGTAGGACATACTGATGATGGGACCGTTGCTGCTGAAGGCAGTTCAGATTTCATCTCAGAAGACAAGGAATCAAAACCTGAGTTGGAAGAGAATACTGAGCCATAA 762 0.4134 MAFCPIFCCGNSSDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWNRRMNIAIGSAEGIGYLHNQSMPHIIHRDIKASNVLLDSDFQAQSQPEKRPTILEVVELLKGESKDKLAQLENNELFKNPPAVGHTDDGTVAAEGSSDFISEDKESKPELEENTEP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00072 253 Coils Coil 191 211 - -
Gma15g00072 253 Gene3D Transferase(Phosphotransferase) domain 1 116 182 - -
Gma15g00072 253 SMART serkin_6 40 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00072 253 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Gma15g00072 253 MobiDBLite consensus disorder prediction 235 253 - -
Gma15g00072 253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Gma15g00072 253 ProSiteProfiles Protein kinase domain profile. 40 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00072 253 PANTHER OS01G0750732 PROTEIN 1 181 - -
Gma15g00072 253 MobiDBLite consensus disorder prediction 209 253 - -
Gma15g00072 253 PANTHER OS01G0750732 PROTEIN 180 250 - -
Gma15g00072 253 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Gma15g00072 253 Pfam Protein tyrosine and serine/threonine kinase 42 177 IPR001245 GO:0004672|GO:0006468
Gma15g00072 253 SUPERFAMILY Protein kinase-like (PK-like) 21 180 IPR011009 -
Gma15g00072 253 PANTHER BNAA05G14800D PROTEIN 1 181 - -
Gma15g00072 253 PANTHER BNAA05G14800D PROTEIN 180 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00072 Gma-Chr15 606823 609230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00072 28 181 Trihelix Transcription Factor Family AT1G70460 53.896 3.48e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gma15g00072 Pkinase 2.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00072 - - gmx:100819540 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00072 15 606823 609230 Gma15g00072 15 606823 609230 ECH
Gma13g03279 13 46756237 46759243 Gma15g00072 15 606823 609230 GST
Gma15g00072 15 606823 609230 Gma07g00276 07 2405946 2415824 PCT
Gma15g00072 15 606823 609230 Gma08g01954 08 17509024 17512376 PCT
Gma07g00276 07 2405946 2415824 Gma15g00072 15 606823 609230 PCT
Gma08g01954 08 17509024 17512376 Gma15g00072 15 606823 609230 PCT