Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00053 atgaatgaatcaagcttctatccttttattaatgaatggaagcctctcgtttgcgttgtcggcgtcccaaatcacatgacctatgcggatttctgccagttctgtggttccttcattcaacacatgctagagatgcgcatagtcaggatggatgggatggaggatcagtacagtgttttagttcgctttgacgatcaagactccaccgacagcttctacaagcactacaatggccgccgtttctcttctctcgagGTTGAGGTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGCTCCATTGAACATGCACAACCCTCCAATGCTACTTCAACTGAACTGCCTACTTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTATGGATATGTGTTATATGTGGGTATGTTGGCTGTGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACAAAACGAGTTTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGATTGAGCTGAACACTCAGTGTGCGCATGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAATGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAGAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAACTAAGATACTTGCGATTGAAGAGAGGGAGAAAAAAACCACGAGACTGATGGGTGATAGAGTAGCGGACCTGGAAATGCAGCTTGGTGATCTCATGGTTTGTCTTGAGGGTGGGAGGACGGTAGAACAGCTGGCAGCTTCAGATGAGATTAAAGAAGGGATTATCTTGGACAAATCAATAGAATCCTCGACAACTAGTGGCTCTGACCTGGTGGGAAGAGACGCATAa 1287 0.3263 MNESSFYPFINEWKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLVRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTELPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLIELNTQCAHADNGCGSCSCEDNAMNEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKTKILAIEEREKKTTRLMGDRVADLEMQLGDLMVCLEGGRTVEQLAASDEIKEGIILDKSIESSTTSGSDLVGRDA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00053 428 CDD RING-H2_BRAP2 117 160 - -
Gma15g00053 428 PANTHER BRCA1-ASSOCIATED PROTEIN 14 415 - -
Gma15g00053 428 Pfam BRCA1-associated protein 2 14 106 IPR011422 -
Gma15g00053 428 Coils Coil 284 322 - -
Gma15g00053 428 Pfam Zn-finger in ubiquitin-hydrolases and other protein 170 229 IPR001607 GO:0008270
Gma15g00053 428 SUPERFAMILY RING/U-box 135 234 - -
Gma15g00053 428 ProSiteProfiles Zinc finger RING-type profile. 119 159 IPR001841 -
Gma15g00053 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 241 IPR013083 -
Gma15g00053 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 161 IPR013083 -
Gma15g00053 428 SMART Zf_UBP_1 169 218 IPR001607 GO:0008270
Gma15g00053 428 ProSiteProfiles Zinc finger UBP-type profile. 153 246 IPR001607 GO:0008270
Gma15g00053 428 CDD RRM_BRAP2_like 17 98 - -
Gma15g00053 428 SMART ring_2 119 158 IPR001841 -
Gma15g00053 428 Pfam Ring finger domain 118 159 IPR001841 -
Gma15g00053 428 Coils Coil 328 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00053 Gma-Chr15 470230 475584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00053 119 159 C3H Transcription Factor Family AT1G72220 48.837 1.18e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00053 K10632 - gmx:100794688 855.899