LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma15g00039	ATGGACATCATGACTGCTCTACAGCTTGTGCTGAGAAAATCTCTGGCCTATGGTGGTCTTGCACGAGGTCTTCATGAAGGTGCTAAGGTGATCGAGAAGCATGCTGCACAGCTCTGCGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCTCTTTGTGCAGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCAGAGGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAAGCCAACTGA	363	0.4683	MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN	120

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma15g00039	120	PANTHER	40S RIBOSOMAL PROTEIN S12	1	119	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Gma15g00039	120	ProSitePatterns	Ribosomal protein S12e signature.	6	24	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Gma15g00039	120	Gene3D	-	1	120	IPR029064	-
	Gma15g00039	120	PANTHER	40S RIBOSOMAL PROTEIN S12	1	119	-	-
	Gma15g00039	120	PRINTS	Ribosomal protein S12E family signature	10	23	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Gma15g00039	120	PRINTS	Ribosomal protein S12E family signature	24	40	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Gma15g00039	120	PRINTS	Ribosomal protein S12E family signature	65	86	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Gma15g00039	120	PRINTS	Ribosomal protein S12E family signature	90	103	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Gma15g00039	120	SUPERFAMILY	L30e-like	2	118	IPR029064	-
	Gma15g00039	120	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	6	99	IPR004038	-
	Gma15g00039	120	Coils	Coil	114	120	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma15g00039	Gma-Chr15	346891	347481	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma15g00039	1	120	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	75.000	9.21e-66	194

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma15g00039	K02951		-	gmx:100500093	244.588

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma15g00039	15	346891	347481	Gma07g00228	07	1883413	1885369	PCT
	Gma15g00039	15	346891	347481	Gma08g01999	08	17988093	17990705	PCT
	Gma07g00228	07	1883413	1885369	Gma15g00039	15	346891	347481	PCT
	Gma08g01999	08	17988093	17990705	Gma15g00039	15	346891	347481	PCT