Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00021 ATGTTCATTGTGGTTGACTACGATAGTTGTTTTAAGTGGCTAAGTCACGACGGGATAGTGGATTCAGTGTCTTCAATGGTGTGGAGGATGACATTCGTTACATGGTTCTCTGGGTATGGTCGTTTTGGAGCCACAGGTCTGGCCGGGTTAAAAAGAATAGCAGCGGGGCCACTTGGGCAGAGGAAGAAGATCAAGAAGACAACAACATCATCACCCTCACCAAACAAGCTTATGGAGATTTGCCGCAACATCATTTTCCCCCTCAGGCGTCTCTGCCTTGCTCTCTCTGCTCGCCTCAAGCCTCGCAAAAACGGAGCTGGACTGCTCAAGCTTCAGGATGATGTACAGACATGCGGATATCAAGATGTACAAGTGATGTGGGAAATGCTACAGAGAACAGAAGGTGAAGTTATAGAAAACCACCATCATAAGCGCAAGCAATTGCCCTTCTGGAGGATCTTTGCTTTGCTGGAGCTGAACCGGCATCACTTGCTGGTACGGGTGATATTAGCGGAACAGGCTCAACAAATTCTAATCCACAATGGAAAATTAAGTTGTATTACAACCAAGGGTGTGACTACAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAGTCTTGAGCAGACTATTCAGCAAATTATGGACCTGGGTGGTGGCAGTTGGGACAGAGATACATCAAACAACGGAAACAGGTGGGGTCACCGCCGGGGCTGTTTCTGGGGTCCGGTCCCTAACTCATCTCCGTTGAATATGTCTCCACAGCCTGTACTTCAGGAACTTGGAAAGCAGAATCTTAGTCTCTCAAGACTTATTCAAGAGCATCATGGTGAATTTCTCCAGTTGATTAACGATCCTGTTGAGGGTTCTGAAGGTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCTATCAATGTGACGCCAGCGGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTCATCGAGGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGAGATTTTGAGGATTAA 1071 0.4678 MFIVVDYDSCFKWLSHDGIVDSVSSMVWRMTFVTWFSGYGRFGATGLAGLKRIAAGPLGQRKKIKKTTTSSPSPNKLMEICRNIIFPLRRLCLALSARLKPRKNGAGLLKLQDDVQTCGYQDVQVMWEMLQRTEGEVIENHHHKRKQLPFWRIFALLELNRHHLLVRVILAEQAQQILIHNGKLSCITTKGVTTDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTSNNGNRWGHRRGCFWGPVPNSSPLNMSPQPVLQELGKQNLSLSRLIQEHHGEFLQLINDPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEACDRDEQLAANYLLENAGDFED 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00021 356 PANTHER UV EXCISION REPAIR PROTEIN RAD23 190 231 - -
Gma15g00021 356 SUPERFAMILY UBA-like 294 353 IPR009060 GO:0005515
Gma15g00021 356 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 258 355 - -
Gma15g00021 356 Gene3D - 306 351 - -
Gma15g00021 356 Pfam XPC-binding domain 258 289 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gma15g00021 356 SUPERFAMILY XPC-binding domain 258 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma15g00021 356 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 190 231 - -
Gma15g00021 356 Pfam UBA/TS-N domain 315 347 IPR015940 -
Gma15g00021 356 Gene3D - 256 291 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma15g00021 356 PRINTS DNA repair protein Rad23 signature 309 325 IPR004806 GO:0006289
Gma15g00021 356 PRINTS DNA repair protein Rad23 signature 260 282 IPR004806 GO:0006289
Gma15g00021 356 PRINTS DNA repair protein Rad23 signature 326 340 IPR004806 GO:0006289
Gma15g00021 356 PANTHER UV EXCISION REPAIR PROTEIN RAD23 258 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00021 Gma-Chr15 206620 214585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00021 K10839 - gmx:100804038 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00021 15 206620 214585 Gma15g00021 15 206620 214585 ECH
Gma13g03329 13 47240649 47245578 Gma15g00021 15 206620 214585 GST
Gma15g00021 15 206620 214585 Gma07g00025 07 221325 227889 PCT
Gma15g00021 15 206620 214585 Gma08g02059 08 18483067 18489612 PCT
Gma07g00025 07 221325 227889 Gma15g00021 15 206620 214585 PCT
Gma08g02059 08 18483067 18489612 Gma15g00021 15 206620 214585 PCT