Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00012 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCCACCACCCGGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTTCTGCTGCTGCTTCCGGCGATGATGATTTACAAAACGTTCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGGTTCGCGTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTTGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGACCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 774 0.4212 MQLASNGDKEECSESEPILNHHHLHLPPPGESSFSCEIIPISAAASGDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 257
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00012 257 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
Gma15g00012 257 SUPERFAMILY RING/U-box 65 121 - -
Gma15g00012 257 SMART ringv_2 69 118 IPR011016 GO:0008270
Gma15g00012 257 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
Gma15g00012 257 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 256 - -
Gma15g00012 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Gma15g00012 257 PANTHER OS02G0132300 PROTEIN 2 256 - -
Gma15g00012 257 CDD RING_CH-C4HC3_MARCH 70 118 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma15g00012 Gma-Chr15 119440 124529 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00012 31 216 C3H Transcription Factor Family AT1G50440 67.526 2.92e-89 262
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00012 - - gmx:100789593 533.872
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03339 13 47341807 47346886 Gma15g00012 15 119440 124529 GST