Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g02162 ATGCTCGATTCTGTGCTTCTGGCGCTTTTCTTGCCGTGCCTCGGCATGAGCGCCGTTTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACCAACCACCACTCCGACCCCCCGCTACCGGCCAAGCCTGTCTCCGACACCGGAATCTCCCCTTCCCAGCTCGACAAGCTCCCCAGAATCACCGGAAAGGACCTTCTCATGGGAAACGAATGCGCCGTCTGCCTGGACGAGATCGGAACAGAGCAACCGGTTCGGGTGGTTCCCGGTTGCAACCACGCCTTCCATTTGGAATGCGCCGACACCTGGCTCTCCAAGCACCCTCTCTGCCCTCTCTGCAGAGCCAAACTCGACCCTTCGCTTTTCTCTTCTTCCCAAAATCCATGCTGA 387 0.584 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATNHHSDPPLPAKPVSDTGISPSQLDKLPRITGKDLLMGNECAVCLDEIGTEQPVRVVPGCNHAFHLECADTWLSKHPLCPLCRAKLDPSLFSSSQNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g02162 128 Pfam Ring finger domain 69 113 IPR001841 -
Gma14g02162 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Gma14g02162 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Gma14g02162 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 119 IPR013083 -
Gma14g02162 128 SMART ring_2 71 112 IPR001841 -
Gma14g02162 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Gma14g02162 128 SUPERFAMILY RING/U-box 55 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g02162 Gma-Chr14 52765941 52767120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g02162 1 128 C3H Transcription Factor Family AT5G42200 47.059 4.93e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g02162 K19037 - gmx:100817919 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g02162 14 52765941 52767120 Gma14g02162 14 52765941 52767120 ECH
Gma17g02488 17 42910480 42911001 Gma14g02162 14 52765941 52767120 GST
Gma14g02162 14 52765941 52767120 Gma04g00199 04 1703267 1704416 PCT
Gma14g02162 14 52765941 52767120 Gma06g00188 06 1643408 1643800 PCT
Gma04g00199 04 1703267 1704416 Gma14g02162 14 52765941 52767120 PCT
Gma06g00188 06 1643408 1643800 Gma14g02162 14 52765941 52767120 PCT