Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01988 ATGAATGGGAACCTCAGCGCCAAGATTGAGGCCGCGAGGGAGATAAGGAAGATGGTTCGGAAATCGTCGTCGTCGTCGAACATCAATCCCCTCTTTTTGGTTCGGAAATTATTGGAGCAGTTAAAGTGCGATTCTGTTCATGGTAAGAGAGAGGCAACAGCAGAACTCCACCTTCTTGCTAAGGAAAATATGGATAACCGAATTGTGATCTCGAATTGTGGAGCCATTAGCTTAATAGTCGATTTACTGCAATCAACGGATACTACAATCCAGGAACATTCTGTTACAACACTTCTTAACTTATCAATCAATGATAACAACAAAGCTGCTATTGCTAATGCTGGTGCAATTGAACCTTTGATTCACGTCCTTCAGATAGGGAGTCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGCAGGGCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAATGGGACCCCTAGAGGGAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCATTATTTCATGAAAACAAGGATCGGATTGTGCAAGCTGGTGCTGTGAAAAACCTTGTAGATTTAATGGACCTGGCAGCCGGAATGGTTGATAAGGTAGTGGCTGTTTTAGCAAATCTTGCTACGATACCAGAAGGGAAAACAGCAATTGGTCAGCAAGGTGGCATTCCTGTTTTGGTTGAAGTTATCGAGTCGGGTTCTGCGAGAGGAAAAGAGAATGCAGCAGCAGCTCTTCTACATCTATGCTCAGACAATCATAGATACTTAAACATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCTTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTAGTGCTGGAAGAGCTTGA 954 0.4423 MNGNLSAKIEAAREIRKMVRKSSSSSNINPLFLVRKLLEQLKCDSVHGKREATAELHLLAKENMDNRIVISNCGAISLIVDLLQSTDTTIQEHSVTTLLNLSINDNNKAAIANAGAIEPLIHVLQIGSPEAKENSAATLFSLSVTEENKIRIGRAGAIRPLVDLLGNGTPRGKKDAATALFNLSLFHENKDRIVQAGAVKNLVDLMDLAAGMVDKVVAVLANLATIPEGKTAIGQQGGIPVLVEVIESGSARGKENAAAALLHLCSDNHRYLNMVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGSAGRA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01988 317 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 238 IPR000225 GO:0005515
Gma14g01988 317 SMART arm_5 186 225 IPR000225 GO:0005515
Gma14g01988 317 SMART arm_5 226 266 IPR000225 GO:0005515
Gma14g01988 317 SMART arm_5 104 144 IPR000225 GO:0005515
Gma14g01988 317 SMART arm_5 267 308 IPR000225 GO:0005515
Gma14g01988 317 SMART arm_5 145 185 IPR000225 GO:0005515
Gma14g01988 317 SMART arm_5 63 103 IPR000225 GO:0005515
Gma14g01988 317 SUPERFAMILY ARM repeat 3 306 IPR016024 -
Gma14g01988 317 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 34 313 - -
Gma14g01988 317 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Gma14g01988 317 Gene3D - 215 313 IPR011989 -
Gma14g01988 317 Gene3D - 109 214 IPR011989 -
Gma14g01988 317 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 157 IPR000225 GO:0005515
Gma14g01988 317 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Gma14g01988 317 PANTHER U BOX DOMAIN-CONTAINING 34 313 - -
Gma14g01988 317 Pfam Armadillo/beta-catenin-like repeat 146 184 IPR000225 GO:0005515
Gma14g01988 317 Pfam Armadillo/beta-catenin-like repeat 104 143 IPR000225 GO:0005515
Gma14g01988 317 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Gma14g01988 317 Pfam Armadillo/beta-catenin-like repeat 65 102 IPR000225 GO:0005515
Gma14g01988 317 Gene3D - 4 108 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01988 Gma-Chr14 50814315 50817185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g01988 34 316 U-box Gene Family AT2G23140 77.032 1.09e-149 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01988 - - gmx:100794660 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01988 14 50814315 50817185 Gma02g02209 02 48078017 48087513 GST
Gma18g00516 18 4849706 4853432 Gma14g01988 14 50814315 50817185 PCT
Gma11g01805 11 20621784 20629690 Gma14g01988 14 50814315 50817185 PCT
Gma14g01988 14 50814315 50817185 Gma18g00516 18 4849706 4853432 PCT
Gma14g01988 14 50814315 50817185 Gma11g01805 11 20621784 20629690 PCT