Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01976 ATGCTCTCAGGGGATATACCTCCAAATCAGACCATTTACATCAAAAATATCAATGAGAAGGTCAAGAAAGATGAATTGAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGAATTTTGGATGTTATTGCTCTGAAGACACCCAAGCTTCGGGGACAGGCGTGGGTTTGTTTCAGTGAAGTCACTGCTGCAAGCAATGCAGTGCGACAAATGCAAAACTTCCCTTTCTATGACAAACCTATGAGAATTCAATATGCAAAAACAAAATCAGACTGTATTGCAAAAGAAGAGGGTACTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAACAATCTGGGGTGGCCAATGGAACACATAGTGCAAGTAATGGTGGTCCAACTGCATCATTCCGTCAAGGACCTGGTGCTCAAGAAACAGCTGCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCAGGTATCGCATTTGTTGATTTTGAAGATGAGGTGCAATCGTCCATGGCCATGCAAGCTCTTCATGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 699 0.4177 MLSGDIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRAEEAQQSGVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01976 232 Gene3D - 149 232 IPR012677 -
Gma14g01976 232 CDD RRM1_U1A_like 11 88 - -
Gma14g01976 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Gma14g01976 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Gma14g01976 232 MobiDBLite consensus disorder prediction 101 123 - -
Gma14g01976 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Gma14g01976 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Gma14g01976 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 232 - -
Gma14g01976 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Gma14g01976 232 SUPERFAMILY RNA-binding domain, RBD 8 221 IPR035979 GO:0003676
Gma14g01976 232 MobiDBLite consensus disorder prediction 101 151 - -
Gma14g01976 232 Gene3D - 4 117 IPR012677 -
Gma14g01976 232 Coils Coil 104 126 - -
Gma14g01976 232 MobiDBLite consensus disorder prediction 125 151 - -
Gma14g01976 232 CDD RRM2_U1A_like 156 228 - -
Gma14g01976 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 232 - -
Gma14g01976 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01976 Gma-Chr14 50621348 50624582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g01976 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 21.186 8.94e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01976 K11094 - gmx:100805822 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01976 14 50621348 50624582 Gma02g02197 02 47924609 47928005 GST