Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01892 ATGGGTTACTTATGTGATTTTTGTGGAGACCAGAGGTCCCTGGTGTACTGCCGCTCTGATGCTGCGTGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCTAGGCGTCATTCGAGAACCCTTGTATGCGAGAGATGCAATTCGCAACCTGCATTTGTGAGGTGTGTTGATGAGAAGATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCACCATCTTCTTCGACACACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGACATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACAGCAATAAGAATGCTTGGGCTTCTCCAGAAGGGCAGAATGTGTCTGGTTCAGCTGAAGTGACTGATCTACCCAGCAAGGGTAAATCTTGGGCTGGCACATCTTCAGTACCTGAGTCAAGCTCAGAACCTCGTATTCTAGACCAGCCGCCTGGACCTGCCAATGAATGTATGCCCAAGTTGTACTGTCCTGGGAAGAAAGTTTCTGGAATATATGAAGATGATGATCTATATGATGATTTCATCATGGATGAAGTGGATCTACAACTTGAGAACTACGAGGAACTTTTTGGGATGGCTCTCAGTCACTCTGAAGAGCTTTTTGAAAATGGTGGAATTAATAGCTTATTTGAGACAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTGAGTTGGTCAATGCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGACTCAATGATGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCTCTATCAAACATTTCTTTCTCTGGTGTTACCAAAGATAGTGTTGGTGACTATCAAGATTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCTAACCGCAGCAATGCTGTCATGCGCTATAAGGAAAAGAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGTCGATTTGTCAAAGCCGGTGATGTCTATGACTATGACCCTTTGAACCAAACCAGAAGCTGCTGA 1236 0.4539 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCVDEKISLCQNCDWLGHGTSPSSSTHKRQSINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENSNKNAWASPEGQNVSGSAEVTDLPSKGKSWAGTSSVPESSSEPRILDQPPGPANECMPKLYCPGKKVSGIYEDDDLYDDFIMDEVDLQLENYEELFGMALSHSEELFENGGINSLFETKDMSASAGDSHCQGAVAAEGSSAELVNAIQPACSNAASADSMMSTKTEPIVCFTARQSLSNISFSGVTKDSVGDYQDCGASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAGDVYDYDPLNQTRSC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01892 411 CDD Bbox1_BBX-like 4 47 - -
Gma14g01892 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gma14g01892 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Gma14g01892 411 MobiDBLite consensus disorder prediction 136 173 - -
Gma14g01892 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Gma14g01892 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Gma14g01892 411 MobiDBLite consensus disorder prediction 136 183 - -
Gma14g01892 411 CDD Bbox1_BBX-like 47 90 - -
Gma14g01892 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Gma14g01892 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gma14g01892 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Gma14g01892 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01892 Gma-Chr14 49615110 49621225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g01892 1 410 C2C2-CO-like Transcription Factor Family AT5G48250 56.501 2.67e-148 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma14g01892 CCT 7.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01892 - - gmx:100783016 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01892 14 49615110 49621225 Gma02g02118 02 47019302 47024349 GST