Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01429 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATCGAGAACTCAAGCAACAGGCAAGTTACCTACTCAAAGAGAAAGAATGGGATCCTTAAGAAAGCTAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATAGACATATTGGAGAGGTACCAGAAGACCTCAGGGAAGAGGATTTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGAGAGGATATTAACTCTCTTAACTACAAGGAGCTGATGGCCTTGGAGGATGCCTTAGAAACTGGTCTAGTCAGTGTCCGAGAGAAACAGGTAACTATTAATCGTCAGGATGACAAGATCTTGGAGGAGGAGAACAGGGAACTTACTTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGTGCGAGAGAAGTGGACAACGGGTTTGATCAGAGCGTAAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTAA 618 0.4482 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYQKTSGKRIWDAKHENLNGEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLVSVREKQVTINRQDDKILEEENRELTFLWQQRLAVEGAREVDNGFDQSVRDYNSHMPFAFRVQPMQPNLQERI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01429 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma14g01429 205 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 205 - -
Gma14g01429 205 Pfam K-box region 82 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma14g01429 205 ProSiteProfiles K-box domain profile. 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma14g01429 205 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Gma14g01429 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma14g01429 205 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Gma14g01429 205 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Gma14g01429 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma14g01429 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma14g01429 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma14g01429 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma14g01429 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 - -
Gma14g01429 205 Coils Coil 77 111 - -
Gma14g01429 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01429 Gma-Chr14 30387870 30391601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g01429 1 143 MADS-box Gene Family AT5G20240 69.930 3.62e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma14g01429 K-box 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01429 K09264 - gmx:100499997 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01429 14 30387870 30391601 Gma14g01429 14 30387870 30391601 ECH
Gma14g01429 14 30387870 30391601 Gma04g02345 04 53882513 53885707 PCT
Gma14g01429 14 30387870 30391601 Gma06g01052 06 9851766 9854459 PCT
Gma04g02345 04 53882513 53885707 Gma14g01429 14 30387870 30391601 PCT
Gma06g01052 06 9851766 9854459 Gma14g01429 14 30387870 30391601 PCT