Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01220 ATGGATGAGTATTCTGGTAAAAGAGGTGTAGATGGGATGGTATTCCCTAGAAAGGGAATGAGCCATGTATTTAGAGATACTGCTAATACTAGAGATCGAAATCGTCAAATTTGTAGCCGATTGGGTTGCAGTAGCCGAGCCAATCTTCCCAAAGTTGCTCAAGTCAGATGTTCTGAAAAAGGTAAATCTTTGAGGCCTTCATACCAGTCCTCTTCAAGTAGCAAGGGAGCAATTGGAAGTTCCTCTAGAACTACTAGTAACCCAGCCAAACGACTTTTAGAACCTAGGAAAACATTATCCTCTCAGTTTGAGGCAGATTCATCTGAAACTAGTAGTGTACAGGATGGACCAGAATTTTCAGAGCTCATCCCTCCAACAGAAGAAATTCGGAGAGGGCCTCTAGCTGAAGGGGAAAATACAGAGTCTAGTAATGCAATATTGATGGAAGTAGGAAGTTCCAGTGCAGTATCAAATACTAGATCTCAAAGGAATTTAAATCAAAGAGCTGGATTGCGTGGGCAAGAAATTAAAAGCACTGGTGCAGTGAGACAGGCTGTTTCCAGCAGTTATGGGTTAAGGAACCTCAAATGCAACTCTATATCTGATGTCGTCCGATCTGGTTGTTCATCATCAGATTCAAGCCTTAATAGAAGGAAGGATACAATAAAAAAGGGAAACTGTGAAGGGGGAGATAGTTCCACTGGTAGGGGGAAGAATATCACTGGGTCTTCACTGGAAGGAAGGAATTTTGGCTCCAGAAATGGCATATCTATATCCAACTCAAGAAGATCTAGAAATATTCCTTCTCACCGGAACACCAGCGTGGCATCAGTAAGAACTCCAAGATCAATTAGTGGTCAAGCCAGGGCAAGGTTTTCTAGCCAAGGAAATGAAAACCCTTTGCCAACCAGTGAGTCCCCTGTTATTGTACCCCTTTCACCTCATTCTGGTGATCTTAATGCTCCTGGCTTTTCATATCATACTTCTATGGAGACTCCTTTAAGTGGCTCAAGCTCTTATGGTAGACCAGGCAATAGCAGTGAGCAGTTAAGTGGTGTTATGCCTGTGTCTCCTGCCGAAGATGACATCACTCATTCTCTAATAAATAGAGATAGCTTTGGACATTACAATATGGGTGGTATTGCAGAGgtattattggcacttgagaggattgaacaagatgcagaactaacccatgagcaaattcttttgttggagaccaacttattcctcaatggattaaacttttatgatcaccacagaggcatgcggttggatattgataacatgtcctatgaggaacttttagctctagaagagaggatgggaactgtgagcaccgctttgccggaggaagcatttGCTGAATGTCTTAAAAGAAGTATATATCAGTCTGCATATACACATGAGTGTTGTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGGATCTGCAATGTGAACATAGATTTCATGTGGTTTGCATACAGGAGTGGTTGCGGCATAAGAACTGGTGCCCTATTTGTAAAGTCTCGGCAGCAATGTCCAATTCATCTTCACCTCATTGA 1605 0.3657 MDEYSGKRGVDGMVFPRKGMSHVFRDTANTRDRNRQICSRLGCSSRANLPKVAQVRCSEKGKSLRPSYQSSSSSKGAIGSSSRTTSNPAKRLLEPRKTLSSQFEADSSETSSVQDGPEFSELIPPTEEIRRGPLAEGENTESSNAILMEVGSSSAVSNTRSQRNLNQRAGLRGQEIKSTGAVRQAVSSSYGLRNLKCNSISDVVRSGCSSSDSSLNRRKDTIKKGNCEGGDSSTGRGKNITGSSLEGRNFGSRNGISISNSRRSRNIPSHRNTSVASVRTPRSISGQARARFSSQGNENPLPTSESPVIVPLSPHSGDLNAPGFSYHTSMETPLSGSSSYGRPGNSSEQLSGVMPVSPAEDDITHSLINRDSFGHYNMGGIAEVLLALERIEQDAELTHEQILLLETNLFLNGLNFYDHHRGMRLDIDNMSYEELLALEERMGTVSTALPEEAFAECLKRSIYQSAYTHECCNEDKDDIKCCICQEEYVVGDEVGDLQCEHRFHVVCIQEWLRHKNWCPICKVSAAMSNSSSPH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01220 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 528 IPR013083 -
Gma14g01220 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 526 - -
Gma14g01220 534 MobiDBLite consensus disorder prediction 327 354 - -
Gma14g01220 534 MobiDBLite consensus disorder prediction 57 172 - -
Gma14g01220 534 SMART ring_2 481 521 IPR001841 -
Gma14g01220 534 MobiDBLite consensus disorder prediction 204 305 - -
Gma14g01220 534 Pfam Ring finger domain 480 522 IPR001841 -
Gma14g01220 534 MobiDBLite consensus disorder prediction 63 91 - -
Gma14g01220 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 526 IPR045191 GO:0061630
Gma14g01220 534 MobiDBLite consensus disorder prediction 137 172 - -
Gma14g01220 534 MobiDBLite consensus disorder prediction 100 117 - -
Gma14g01220 534 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Gma14g01220 534 MobiDBLite consensus disorder prediction 232 305 - -
Gma14g01220 534 MobiDBLite consensus disorder prediction 327 353 - -
Gma14g01220 534 Coils Coil 388 408 - -
Gma14g01220 534 SUPERFAMILY RING/U-box 475 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01220 Gma-Chr14 19795388 19798796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g01220 381 525 C3H Transcription Factor Family AT2G15530 43.836 1.35e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01220 - - gmx:100812055 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01220 14 19795388 19798796 Gma14g01220 14 19795388 19798796 ECH
Gma17g01875 17 32508736 32511911 Gma14g01220 14 19795388 19798796 GST
Gma14g01220 14 19795388 19798796 Gma04g00687 04 6402920 6407349 PCT
Gma14g01220 14 19795388 19798796 Gma06g00681 06 6180927 6185382 PCT
Gma04g00687 04 6402920 6407349 Gma14g01220 14 19795388 19798796 PCT
Gma06g00681 06 6180927 6185382 Gma14g01220 14 19795388 19798796 PCT