Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00796 ATGATACTAGAAGAAGGGTGTGCAAAAATGCAATTTTTTCAGCCATCTAAGGAGAGAGAAGATGAGAATGCGAAGATTGAAGAAGCTGGTGTGGATCTGAAGGTGATGATTGAGGAAATGGAATCCATTGATGTGCCTTCAGTGTTCATCTGCCCAATCTCCCTTGAACCAATGCAAGACCCTGTGACCCTTTGCACTGGTCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTTGGCCACAAAACATGTCCCACAACAATGCAAGAGCTTTGGGACGATGTTGTCACTCCCAATAGCACCCTCTCCCACTTGATGCTCACTTGGTTCTCTCAAAAGTACTTGGCCTTGAAGAAGAAGCTCAAGGATGTTCAAGGAAGAGCCTTGGAAATCTTGAACATGCTCAAGAAGGTAAAGGGTCAAGCTAGAGTTCGAGCACTTCAAGATCTAAGGCAACTTGTGGCTTCTCATGTCAATGCAAGGAAGGCACTTGAGGAAAATGGTGGGGTTGCTTTGGTTTTCAATTTTTTGGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCTATTGGGATCATAGTGTGTTTGGATTTGAGTTCTGAAGTGAAGAGAAGTCTCATGCATCCTGCTAAGGTGTCATTGTTGGTGGATATCATGAATGAGGGAACCATTGAGACCAAAATGAACTGTGCCAAGTTGATTGAGATGTTGTTGGTGGAAGGGAACAATGAGACTGTTTCAAGTTTGAGTCTTTTAGTTGGGTTGTTGAGGCTAGTGAGGGATAAGAAACACCCAAATGGGGTGGTCTCAATTGGTCTCATACTACTCAAGAAGGCTATAATATGTTCCCATGAATCAGTTAGAAGCTCTTTGATAAGCCTAGGAGCAATTCCTCTATTGATTGAGCTTTTGCCTAGTTTGAACAATGAGTGTTTGGAGAAAGCACTCTACATACTTGAGGTGTTGTCAACACTTCCAGAGGGAAGAATGGCTTTGAAGGAGTGTCCAAATATCATTCCCAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGCACACAATTTGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCCCCTGAAGAGTGTGCCTCCAAGGCTGTGGAGGCTGGATTGGCAGCAAAGCTTCTGTTGGTGATTCAGAGTGGCTGCAACCCTGTGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGTCTGAATTACTCAACTAGCATCTTGGTTTCCAAGTGTATGCTCACCACAACAATACAATGA 1293 0.4362 MILEEGCAKMQFFQPSKEREDENAKIEEAGVDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDVVTPNSTLSHLMLTWFSQKYLALKKKLKDVQGRALEILNMLKKVKGQARVRALQDLRQLVASHVNARKALEENGGVALVFNFLGPFTSHAVGSEAIGIIVCLDLSSEVKRSLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLVEGNNETVSSLSLLVGLLRLVRDKKHPNGVVSIGLILLKKAIICSHESVRSSLISLGAIPLLIELLPSLNNECLEKALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSERCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTSILVSKCMLTTTIQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00796 430 SUPERFAMILY ARM repeat 254 413 IPR016024 -
Gma14g00796 430 CDD RING-Ubox_PUB 49 91 IPR045210 -
Gma14g00796 430 Pfam U-box domain 45 115 IPR003613 GO:0004842|GO:0016567
Gma14g00796 430 Gene3D - 262 424 IPR011989 -
Gma14g00796 430 SUPERFAMILY RING/U-box 39 115 - -
Gma14g00796 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 127 IPR013083 -
Gma14g00796 430 ProSiteProfiles U-box domain profile. 44 118 IPR003613 GO:0004842|GO:0016567
Gma14g00796 430 SMART Ubox_2 48 111 IPR003613 GO:0004842|GO:0016567
Gma14g00796 430 PANTHER WDSAM1 PROTEIN 25 429 IPR045185 GO:0061630
Gma14g00796 430 SUPERFAMILY ARM repeat 133 246 IPR016024 -
Gma14g00796 430 Gene3D - 130 261 IPR011989 -
Gma14g00796 430 Coils Coil 149 169 - -
Gma14g00796 430 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00796 Gma-Chr14 8270997 8272571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00796 31 430 U-box Gene Family AT3G49810 63.682 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00796 - - gmx:100803878 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00796 14 8270997 8272571 Gma14g00796 14 8270997 8272571 ECH