Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00589 ATGCTAGCGCTACTCCAGAACTGCTCCATGCCCCTCGCACGTGCGGTGCGGTCTCCACCTCGCACGCACGTGCGACCTTGTTTCACGGCCGTGGCCTACGCATCCATTTCCTCACGTGCTAACTCCCAGTCTCAGGTTCTCCTCGGCTTGTCCGAGAAGGAGCTGCAACAACTCGCCCTTGACCTCAATCAGGAAACCTATAGGGGCAAACAACTTCATCATTTTTTATACCAGAGGAAGCTCAGAGAAATTCAGGATTTCACTCAATTGCCTCAGGGATTTAGGAATACTCTTGAGGAAACTGGATGGAAGGTGGGCCGGTCTCCTATTTTCCAAACTGTAACTGCAGCTGATGGAACTGTTAAGTTGTTGTTGAAGTTGGAGGACAATAGATTGGTTGAAACTGTTGGCATTCCGGTTATGGTTGATAAAGGCCTGACTCGCCTCACAGCATGTGTTTCATCTCAGGTTGGTTGCCCTTTACGCTGCTCTTTTTGTGCCACTGGAAAAGGGGGGTTTTCAAGGAATCTTCAGAGACATGAAATCATTGAACAGGTCTTGGCCATTGAGGAGGTCTTCAAGAATAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACCGTTGCTTGAATAAGGATGTACAAATTGGGCAAAGAATGATAACCATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCCACTCTAGCTGTGAGCCTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTATCCACTGGATGCACTTATGAGTGATTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATATGCACTTTTAGCTGGAGTCAATGACTCGGTAGACCATGCATTAGAACTTGCTGAGTTACTTCATCGATCGGGCAGTGGATATCACGTCAACTTGATACCTTTCAATCCAATAGAAGGCTCTGAGTATCAGCGTCCTTCCAAGAGAGCAGTGCTAACATTTTCTGGTGCTTTGGAGTCCTCTAAAATAACTGTTAGTGTACGTCAAACAAGAGGACTGGATGCAAATGCAGCTTGTGGTCAGCTACGGAACAAGTTCCAGAAAACTCCTTTAGTCACTGACCCTTTTGATCTTGCAGTCACCGACACTTCTATGCCATACAATAACAATTTTGCAATTTTGCTCATGAACAATTCCTTTGCAATATGGCACAATTTTGAGGTTGGCCTTCAGGACATGCTACCACTACCCTATCAAATTGCAGAAACGAATCGAAGTCTTTTTCTTCTTCTTCCTCCTCTTACGAACTCGCGAGATTTCTTTGTCCTCACTCAAGGGTTAGGGATGCGGCGGAACAGTCCAGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCGGTGGCCGAGGAGGAGGGTCCGGCAGGAGGGGATTCGGTGGAGGCAGGCGCAGGGACAGCAATGGGAGCCTCTTGGTTCGTAACATTCCCCTCGATTGCAGACCCGAGGAGCTTCGCGTCCCTTTCGAACGATTCGGGCCTGTTCGTGATGTTTACATACCCAAGGATTATTATTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGCCACAGGACTAGTAGGTTCAGAGGACCAGCAAGCTATGGAGGCCGAAGGTCTTCTCATTACGGGCGTTCTCGATCTCGCTCAATTACCAGATCACGCTCGCCACCTTATCACTCTGGTTCTAGAAATCGATATCGCTCAAGGCAAGATTCTTTGAAGTCCTATTCTCCTGCTCCAAGACGACAAAGCGATTACTCTGTTTCCCCTGGGAGGCAAGCTGAGCACCCCAGATCACCAAGAGGTCCTCCCAGGGAGAAGGATGGTGATCAAAAGCGTAGGTCTTATTCTCCTGCTTATGGCAATGGTATCGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAGGCTGATGCTGATCGCGTGGAAGATGAGGTTGCAGGTAGCTGGCAATGTGCTGCTGGGGCTTCTGTACATTTCCTGCAACTTATCGCAACATTTGCAAAATCCTGTATTTTGCTTGAAGTTTGCGAATATGATGGATGA 2283 0.4717 MLALLQNCSMPLARAVRSPPRTHVRPCFTAVAYASISSRANSQSQVLLGLSEKELQQLALDLNQETYRGKQLHHFLYQRKLREIQDFTQLPQGFRNTLEETGWKVGRSPIFQTVTAADGTVKLLLKLEDNRLVETVGIPVMVDKGLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYALLAGVNDSVDHALELAELLHRSGSGYHVNLIPFNPIEGSEYQRPSKRAVLTFSGALESSKITVSVRQTRGLDANAACGQLRNKFQKTPLVTDPFDLAVTDTSMPYNNNFAILLMNNSFAIWHNFEVGLQDMLPLPYQIAETNRSLFLLLPPLTNSRDFFVLTQGLGMRRNSPAYYSPPRRGYGGGGRGGGSGRRGFGGGRRRDSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTSRFRGPASYGGRRSSHYGRSRSRSITRSRSPPYHSGSRNRYRSRQDSLKSYSPAPRRQSDYSVSPGRQAEHPRSPRGPPREKDGDQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADADRVEDEVAGSWQCAAGASVHFLQLIATFAKSCILLEVCEYDG 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00589 760 Gene3D - 45 101 - -
Gma14g00589 760 PANTHER 23S RRNA METHYLTRANSFERASE 35 394 IPR040072 -
Gma14g00589 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 587 IPR000504 GO:0003723
Gma14g00589 760 ProSiteProfiles Radical SAM core domain profile. 145 375 IPR007197 GO:0003824|GO:0051536
Gma14g00589 760 CDD Radical_SAM 158 351 - -
Gma14g00589 760 MobiDBLite consensus disorder prediction 645 664 - -
Gma14g00589 760 SMART rrm1_1 510 583 IPR000504 GO:0003723
Gma14g00589 760 MobiDBLite consensus disorder prediction 479 506 - -
Gma14g00589 760 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 44 389 IPR027492 GO:0030488|GO:0070475
Gma14g00589 760 SUPERFAMILY Radical SAM enzymes 122 345 - -
Gma14g00589 760 SFLD methyltransferase (Class A) 42 389 - -
Gma14g00589 760 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 42 387 IPR027492 GO:0030488|GO:0070475
Gma14g00589 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 511 580 IPR000504 GO:0003723
Gma14g00589 760 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 35 394 - -
Gma14g00589 760 MobiDBLite consensus disorder prediction 672 688 - -
Gma14g00589 760 SUPERFAMILY RNA-binding domain, RBD 506 614 IPR035979 GO:0003676
Gma14g00589 760 Gene3D Aldolase class I 108 392 IPR013785 -
Gma14g00589 760 Gene3D - 503 646 IPR012677 -
Gma14g00589 760 SFLD adenosine C2 methyltransferase (RlmN-like) 42 389 IPR004383 GO:0006364|GO:0008173
Gma14g00589 760 Pfam Radical SAM superfamily 154 315 IPR007197 GO:0003824|GO:0051536
Gma14g00589 760 MobiDBLite consensus disorder prediction 588 706 - -
Gma14g00589 760 MobiDBLite consensus disorder prediction 623 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00589 Gma-Chr14 5735323 5745841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00589 438 571 Eukaryotic Initiation Factors Gene Family AT3G11400 33.582 1.71e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00589 K06941 - gmx:100818638 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00589 14 5735323 5745841 Gma14g00589 14 5735323 5745841 ECH