Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00578 ATGCCCGTTTGTCCCGATTGCGACAGCGGATTCGTCGAAGAGATCGAACCTTCGAACCGGCCCGTCCACCACGTGGAAACTCGCCGCCGTAGGTTCCCGACAGCGGCGGCGATGTACATGATGGGCCACCGTTCGGGTAACTCGGATCACAACCCCCGTTACTCTAGCCGTCAGCATTGCCGGAACGTTATCGGAGACCGGTCACTGCTCAACCGGGTCATCATGCTCCAGAGCGAGGGGACAAGCCGCGACCGTGGCTCCGGTTTCGAGCTTTTCTTCGACGACGGAGCCGGTTCCGGTTTCCGACCTCTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGGATCGACCGTGTCATGGACCAGCTTTCCCACGTGGAGTCAAACTCCGACGGCGGGAGGCACGACCAGCAGAGCCACGCGCCGGCGTCGAAATCCGCCGTGGAGTCCCTGCCGGCGATTGAGATAAACGCGACCCACACGGCGATTGAATCGCACTGCGCGGTTTGCAAGGAGCCTTTCGAGCTTTGCACCATGGCAAAGGAAATGCCATGCAAACACATATACCACGCGGAATGCATACTACCGTGGCTCGCGATTAAAAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCATGCGAGAACGCACGTGCGAGATTGGAGCGCGTGGAGGAGGAGGAAGAGAACAACAACTTGGGGTTAACGATCTGGAGGTTACCGGGTGGCGGTTTTGCGGTGGGGAGATTCGGAAGAAGAGAGGGTGAGAGAGAGGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTTAACTTCAACAACGTTCTTGTGGGGGAACCGAGGAGGGTTTCGTGGTCGGTGTTGGAGTCTAGCGGGAGCAGAAGAGGTGGCGCGTTTAGGAGAATGTTTAACCATTTGTTTAGTTGCCTGAGAGGTGGTGGGGTTGGGCCTAATCGTTCTTCTTCTTCAAGCACTGTGAGGAGTAATAGTTTTAGGGCTTCTACTCGTCAAAGCGTGGGTCCCTCTCCACCTTCTTCGCGTAGGACTTGGTCTATGGATGTCAACGGGGGAACCAGACCATGGTAA 1092 0.5705 MPVCPDCDSGFVEEIEPSNRPVHHVETRRRRFPTAAAMYMMGHRSGNSDHNPRYSSRQHCRNVIGDRSLLNRVIMLQSEGTSRDRGSGFELFFDDGAGSGFRPLPPRMSEFLLGTGIDRVMDQLSHVESNSDGGRHDQQSHAPASKSAVESLPAIEINATHTAIESHCAVCKEPFELCTMAKEMPCKHIYHAECILPWLAIKNSCPVCRHELPCENARARLERVEEEEENNNLGLTIWRLPGGGFAVGRFGRREGEREVNVPLVYTEVDGGFNFNNVLVGEPRRVSWSVLESSGSRRGGAFRRMFNHLFSCLRGGGVGPNRSSSSSTVRSNSFRASTRQSVGPSPPSSRRTWSMDVNGGTRPW 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00578 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 215 IPR013083 -
Gma14g00578 363 MobiDBLite consensus disorder prediction 319 363 - -
Gma14g00578 363 ProSiteProfiles Zinc finger RING-type profile. 168 209 IPR001841 -
Gma14g00578 363 SMART ring_2 168 208 IPR001841 -
Gma14g00578 363 Pfam Ring finger domain 167 209 IPR001841 -
Gma14g00578 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 311 - -
Gma14g00578 363 MobiDBLite consensus disorder prediction 128 149 - -
Gma14g00578 363 Pfam Protein of unknown function (DUF1117) 234 335 IPR010543 -
Gma14g00578 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 1 311 - -
Gma14g00578 363 MobiDBLite consensus disorder prediction 319 355 - -
Gma14g00578 363 CDD RING-H2_RNF181 168 212 - -
Gma14g00578 363 SUPERFAMILY RING/U-box 149 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00578 Gma-Chr14 5565398 5566489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00578 54 216 C3H Transcription Factor Family AT5G01980 33.742 2.42e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00578 - K11982 gmx:100789228 677.552