Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00517 ATGGCGGGGAAAGTGGCAAAGGCAGCTTATGATGCAAAGATGCTGAAGCTTCTGAAAGAGTACAGTCAGGTGCTGGTGGTTTCATCAGACAATGTGGGTTCCAACCAGCTTCAGGGCATACGGAGGGGACTTAATGCTGATTCGGTGGTGGTGATGGGAAAGAACTCCATGATGAAACGCTCTATCATCTTGGATGCTCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACTTGAGGGAAGTTAGCGAACAGATTGCCAAGTACAAGGTTGTTCAACCTATTCTCATGTGCCCCAAGTACACGTCATATGACACATACCAGAATTGTACTTATATGCAATCTGGACAGATACCTTTGGGCCTCACGTGTTGTAATCAGCAATCTTCGCAAGCTTCTGAGCCTTTTCTTAGCTTCGTCTTGGCCCTCGATTTTGCCCTAAAGTACTCTCAGTCACAACAGACACCGTCGTCGTCGTCGTCGTCATCAATGGCACCGAAGCAGACCAAGGCTGAGAAGAAGATCGCTTACGATGCGAAGCTGTGCGACCTAATGGAGGAGTACGGCCAGATCCTCGTTGTGAACTCCGATAACGTGGGATCGAACCAGCTCCAGAACATTCGCAAGGGTCTCCGTGGCGACTCCGTCGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCAGTCAGGATGCACGCTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTTGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAGGAGGTTGCCAAGTACAAGgttggagctcctgctcgtgttggtttggTTGCCCCAATTGATGTTGTTGTTcctcctggcaacacagggctcgatccctcccagacctctttcttccagGTGCTCAACATTCCTACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTGGAGCTCATTAAGAAGGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGGATAAGGCCCTTCTCGTATGGGCTTGTGGTTCTTTCTGTTTATGATAATGGTTCAGTGTTCAGTCCTGAGGTTCTTGAtcttactgaggatgaccttattgagaagtttgctgctggtgtctcaatggttacttcactttcattagctatctcatacccaacacttgctgctgcaccacacatgtttgtcaatgcctacaagaatgttcttgctgttgcggttgagacagattattctttccctgaggcagacaaggtcaaggagtatctgaagGATCCAAGTAAATTTgctgtcgctgctgttgctgctcctgctgctgagtctggtgctcctgctgcagccaaggaagagGAAAAGAAGGAAGAACCAGCTGAAGAATCTGATGATGACATGGGTTTCAGAGTGATGATAAGATGCCTAATAGCATTAAACTTCAACCTCAAATGTCTTGAAGCAAGCAATGTTGCTCTAGCTTTCGCGATTACTTCCCGCTATGAAATGAGATCTCTAACAATGCCTCGACCTGCAGCTTCTCTTTTTCTTGAAATTCGAATTGTTAACTGA 1644 0.3717 MAGKVAKAAYDAKMLKLLKEYSQVLVVSSDNVGSNQLQGIRRGLNADSVVVMGKNSMMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQIAKYKVVQPILMCPKYTSYDTYQNCTYMQSGQIPLGLTCCNQQSSQASEPFLSFVLALDFALKYSQSQQTPSSSSSSSMAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAESGAPAAAKEEEKKEEPAEESDDDMGFRVMIRCLIALNFNLKCLEASNVALAFAITSRYEMRSLTMPRPAASLFLEIRIVN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00517 547 Gene3D - 184 387 IPR043141 -
Gma14g00517 547 CDD Ribosomal_P0_L10e 187 363 - -
Gma14g00517 547 Gene3D - 3 126 IPR043141 -
Gma14g00517 547 MobiDBLite consensus disorder prediction 468 488 - -
Gma14g00517 547 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 6 110 - -
Gma14g00517 547 Pfam Ribosomal protein L10 6 104 IPR001790 -
Gma14g00517 547 Pfam Ribosomal protein L10 185 286 IPR001790 -
Gma14g00517 547 Pfam Insertion domain in 60S ribosomal protein L10P 292 361 IPR040637 -
Gma14g00517 547 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 6 110 - -
Gma14g00517 547 Pfam 60s Acidic ribosomal protein 412 493 - -
Gma14g00517 547 CDD Ribosomal_L10_P0 7 111 - -
Gma14g00517 547 MobiDBLite consensus disorder prediction 472 488 - -
Gma14g00517 547 SUPERFAMILY Ribosomal protein L10-like 186 312 IPR043141 -
Gma14g00517 547 Gene3D - 292 363 IPR043164 -
Gma14g00517 547 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 179 495 - -
Gma14g00517 547 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 179 495 - -
Gma14g00517 547 SUPERFAMILY Ribosomal protein L10-like 7 105 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00517 Gma-Chr14 4942990 4948652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00517 179 493 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.857 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00517 K02941 - gmx:100777482 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00517 14 4942990 4948652 Gma14g00517 14 4942990 4948652 ECH