Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00478 atggctaggggactaaagaagcatttgaaaaggctcaatgctcctaagcattggatgcttgacaaactgggtggtgcatttgcgcctaaaccctcatctggaccacacaaatcgagggagtgcctccccctcattcttattctgcgaaaccggctgaagtatgctctgacataccGTGAAGTCATTGCTATTCTGATGCAGCGCCATGTTCTTGTTGATGGCAAAGTCAGGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTTTCAATCCCAAAAACAAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTTCATTCCATCAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTAGGTCAGTACAGTTTGGCCAGAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACCATCCGTTACCCAGACCCTCTCATCAGGGCCAATGACACTGTTAAGCTGGATCTGGAGGAAAACAAGATTGTCGATTTTATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGAAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGTAGCTTCGAGACAATTCACGTGCAGGATGCCACTGGGCATGAATTTGCTACTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGATATCCCTGCCCAAGGGTAAGGGTATTAAGCTATCAATCATTGAAGAAGCTAGGAAAAGGATTGCCGCCCAGCAAGCAACTACTGCTTAA 795 0.361 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATTA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00478 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Gma14g00478 264 CDD KOW_RPS4 175 229 IPR041982 -
Gma14g00478 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma14g00478 264 Pfam KOW motif 177 210 IPR005824 -
Gma14g00478 264 Gene3D - 122 172 IPR038237 -
Gma14g00478 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Gma14g00478 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Gma14g00478 264 SMART kow_9 174 201 IPR005824 -
Gma14g00478 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 220 - -
Gma14g00478 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 264 - -
Gma14g00478 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Gma14g00478 264 SMART s4_6 42 106 IPR002942 GO:0003723
Gma14g00478 264 Gene3D - 175 245 IPR014722 -
Gma14g00478 264 Gene3D - 1 117 IPR036986 GO:0003723
Gma14g00478 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma14g00478 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma14g00478 264 CDD S4 51 112 - -
Gma14g00478 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Gma14g00478 264 ProSiteProfiles S4 RNA-binding domain profile. 42 104 - -
Gma14g00478 264 Pfam 40S ribosomal protein S4 C-terminus 212 258 IPR032277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00478 Gma-Chr14 4551827 4554535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00478 1 262 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.603 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00478 K02987 - gmx:100811336 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02472 02 50826027 50828780 Gma14g00478 14 4551827 4554535 ECH
Gma03g00388 03 6498119 6500341 Gma14g00478 14 4551827 4554535 ECH
Gma01g01269 01 45044172 45046994 Gma14g00478 14 4551827 4554535 ECH
Gma14g00478 14 4551827 4554535 Gma14g00478 14 4551827 4554535 ECH