Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00474 ATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGCATCCATTCAGTCCTCACCCCTTTGAAGCAGTTGCATTTGGCTCATGGCAAGCCGTGGAGTTCATAAAAATTGAGGGAGGAACTATGTCCATGCATTTTGTAGATAATCATCATATGGTTATGGAGAAAGGACCCTTGTCAGATATACGGATAAGGTCAAGGAATGCTACTTTATCAGATTGCTCCCGTTTTCTACGTCCTGGAATTGATGTATGTGTGCTATCTGCCCCTCAACAATCTGATGATGCAGATGCAATTAATATCGACCCTGTTTGGGCTGATGCCAAAATAAGCTCTGTACAGAGAAAACCTCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTTTATGTTCATCAAGGTTCACTCGGTGCAGAGCTAAGAACTCTCAGTAGGGAGATCAAAGTGGTTGGAATCAATCAAATATCCATCCTCCAAAAACTTGAAAGTACTCCTTGTGAAAATCAGCACTACCGGTGGGCATCATCTGAGGACTGTTCCATTATATCACACACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACCACAGCTTTAAAGAAGGTTTCAATCTGCGTAAGATCTCTACAAGACAAGCTAGTGTATCAAGTTTTGGGAAGGGATACTGTTAGCACTTCATTGAACAATGAATCTCACATTGATGTTGTGAATTTCAAAACAGACAAAGGCATGTTAGTACCCATTGTTTCTCAAGTAGCTACACTTAAAACCAAGAGGGTTGATCCTGAACAGGAATCCCATGAAGATAAAGAATCACCATCTTACAATGTCGAAGGCTTAAGGCGTTCCAAACGTCGGAATGTACAACCTGAGCGTTACCTTGGTTGTGAAAAAGTTTCCCAGATTGATGTTGGTTCTTTTAGAAACTTACCACCAGTTAAGATAGACACTTGGAAAGATAATGATATTGATCATGAAATGTATATACCATTAGCCGGCCTGTTTCGTTGGCAAAAGAAGTGTCTAGAAGGGGATACTGACAATCATCAAAAGGTCAAGAAGGTGAGTACATGCCGGGAGCTTGTGGTGTACAAAAGGAAGAAGACTAAATCCCAGAAAGTGAGGTCAGGAGGTGATGATCAGAATGAACATCAAAATCATCTGGCTATTATTCCTCTTCCTGCTCAACATGATCCGGTAGAAGTTATACATTGTGATGATCTATATGACAAGGTTACTAGAAGTTATGGTAATGAATCCTCTGAAATTTCTTCCAAGTATCATCATCTAACTGGTACCACTTCAAAGAAGAACGATGTTAAATTGTTAACTTTTGAGTCTCATTATCATGCTGCAAAGTCAGATGATGGAGAAAAGAGTGATGATTTGTCATGGAGATATCATTATAGTTATGGCGCCCCTAAGTCACAGAGGAAGGGTTTAAGTGATCTGGATGATATGGTGAATCTTGGAAATAAATGGGAAGGGATTAGTTCCAGTAAAGTAGTTAAAGGGAAAAAACACCGTACAACATATTTTGGAAGTAGAGATCATGGAGAAGAAAAAAGATACAATTATAAAGACAGATCCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTGAAGAATATTAATACTAGACCAACCAATGAAGAACCAGCTATTGCTGACCAGTGGAAGCAAACGGAAACACCAAGCAGCATTGGGCAAAAGACAGAAACTGAGGTGCTCCGCAAAGAGGAGGCGGAAGAAGAATCTGAAATGGATATGCTGTGGAGAGAACTGGAAGTGTCATTGGCATCATGCTATCTAGAAGAAGACACAGAAGATTCAAATGCTGCTGTTTTCACTGAGACTCTGGAAAATCCGAATGCAGGTTGTCCTCATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACGGAGATCAAATATATTACACCTCCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAAGCAGATCCCTGAAGAAGATTCAAAGACCAAGGCTAATGAAGACGATGACATTGATCTCTTGCCAGCTCTAGACTCTCCTGAGAAACCTGTGTCTCAAGAAAATGATAACGTTTGGGTGTTAATTCCCGAACTTAAAGCAAAGTTGCACGCCCACCAGAAGAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGACCCGGGATTGATGGAAGCAGCATCCAAAAGAAGAGGTGGCTGTGTGGTATCTCATACTCCTGGAGCGGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCATTAGTCCTTGCTCCAAAGACAACACTCTATACTTGGTACAAGGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACCGTGTATTCAAGCAGAAATCCTCGATTGTTATTCCTGGAGTTCCTAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCACCCGAGTGTTCTGATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACATAGGAAATACATGGCTAAGGTATTGAGGGAAAGCCCTGGGGTCATGGTGCTGGATGAAGGGCACAATCCTAGAAGCACCAAATCTAGGCTGAGAAAAGTTTTGATGAAAGTGCAGACAGAACTGAGAATACTGCTTTCTGGCACATTGTTTCAGAACAATTTCTGCGAGTACTTCAACACTTTGTGCTTGGCAAGGCCAAAGTTTATTCATGAAGTACTGAAAGCATTGGACCCGAAATACAAGAGGAAAGGAAAAGTGGCAAAAAAAGCGAGTCATTTATTAGAGTCGCGAGCTAGAAAATTCTTCTTAGACCAAATTGCTAAGAAAATTGACTCAAGTAATGGTAGGGAGAGGCGGAAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATTGATGTGTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTGATGAATTCAACTGATACACAGCACGAGATTTTGCATGAACTGCACAAGAAAATGGCCAAAGTCAATGGATACCCTCTGGAGCTAGAACTTTTGATAACTCTAGGTTCAATACATCCTTGGTTGGTGAAATCAGCAGTATGTGCTGAGAAATTTTTCACTCAAGCGCAATTGATGGAGCTAGAGAAATGCAAGTTTGATCTGAGAATAGGGTCCAAAGTAAAATTTGTTTTGAGTCTTATCTACAGGGTTGTCAAGAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTTAAGTTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGACAAAAGGTAGGGAAGTGTTGGTGCTAACTGGGGAACTAGAGCTGTTTGAAAGGGGGAGAGTGATGGACAAGTTTGAGGAGCCTGGTGGAGTAGCAAAGATACTACTTGCTTCAATCACTGCTTGTGCTGAAGGCATTAGTTTAACAGCTGCTTCAAGAGTGATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCCATTGCCCGTGCCTTTCGCCCCGGTCAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAAAAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAAATGGTTGCGGAGGACCGGTCTAAATCATTCCATATGATCATGAAGAATGAAAAAGCTTCTACCAACAAATAA 3924 0.408 MAHRKRRLDQLKHPFSPHPFEAVAFGSWQAVEFIKIEGGTMSMHFVDNHHMVMEKGPLSDIRIRSRNATLSDCSRFLRPGIDVCVLSAPQQSDDADAINIDPVWADAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSREIKVVGINQISILQKLESTPCENQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVTTALKKVSICVRSLQDKLVYQVLGRDTVSTSLNNESHIDVVNFKTDKGMLVPIVSQVATLKTKRVDPEQESHEDKESPSYNVEGLRRSKRRNVQPERYLGCEKVSQIDVGSFRNLPPVKIDTWKDNDIDHEMYIPLAGLFRWQKKCLEGDTDNHQKVKKVSTCRELVVYKRKKTKSQKVRSGGDDQNEHQNHLAIIPLPAQHDPVEVIHCDDLYDKVTRSYGNESSEISSKYHHLTGTTSKKNDVKLLTFESHYHAAKSDDGEKSDDLSWRYHYSYGAPKSQRKGLSDLDDMVNLGNKWEGISSSKVVKGKKHRTTYFGSRDHGEEKRYNYKDRSLNAAAYKDLINSYLKNINTRPTNEEPAIADQWKQTETPSSIGQKTETEVLRKEEAEEESEMDMLWRELEVSLASCYLEEDTEDSNAAVFTETLENPNAGCPHDFRMNEEIGIYCYRCGFVSTEIKYITPPFIQHSVWHQEEKQIPEEDSKTKANEDDDIDLLPALDSPEKPVSQENDNVWVLIPELKAKLHAHQKKAFEFLWQNIAGSMDPGLMEAASKRRGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGVMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYKRKGKVAKKASHLLESRARKFFLDQIAKKIDSSNGRERRKGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHELHKKMAKVNGYPLELELLITLGSIHPWLVKSAVCAEKFFTQAQLMELEKCKFDLRIGSKVKFVLSLIYRVVKKEKVLIFCHNIAPVKLFVEYFEKYFGWTKGREVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYKRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNK 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00474 1307 SMART ultradead3 722 956 IPR014001 -
Gma14g00474 1307 Gene3D - 701 993 IPR038718 -
Gma14g00474 1307 CDD DEXHc_ATRX-like 726 956 - -
Gma14g00474 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1288 IPR027417 -
Gma14g00474 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1305 - -
Gma14g00474 1307 Gene3D - 1081 1300 IPR027417 -
Gma14g00474 1307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1113 1277 IPR001650 -
Gma14g00474 1307 MobiDBLite consensus disorder prediction 264 288 - -
Gma14g00474 1307 CDD SF2_C_SNF 1101 1237 - -
Gma14g00474 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 953 IPR027417 -
Gma14g00474 1307 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 751 951 IPR014001 -
Gma14g00474 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1305 IPR044567 GO:0080188
Gma14g00474 1307 Pfam SNF2-related domain 751 994 IPR000330 GO:0005524|GO:0140658
Gma14g00474 1307 MobiDBLite consensus disorder prediction 263 288 - -
Gma14g00474 1307 Pfam Helicase conserved C-terminal domain 1109 1225 IPR001650 -
Gma14g00474 1307 SMART helicmild6 1137 1226 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00474 Gma-Chr14 4474915 4481318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00474 1138 1244 RAD5 or RAD16-like Gene Family AT5G05130 38.182 5.70e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma14g00474 SNF2_N 1.6e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00474 K10875 - gmx:100811703 2604.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00474 14 4474915 4481318 Gma14g00474 14 4474915 4481318 ECH
Gma18g00222 18 1777168 1779087 Gma14g00474 14 4474915 4481318 PCT
Gma11g02354 11 38951262 38952636 Gma14g00474 14 4474915 4481318 PCT
Gma14g00474 14 4474915 4481318 Gma18g00222 18 1777168 1779087 PCT
Gma14g00474 14 4474915 4481318 Gma11g02354 11 38951262 38952636 PCT