Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00236 ATGGAATTTCCCAACGAAGCAATACCAGAAGGGTGTTCACAGAAGAAAACGGGAAGGGGGAAAATAGAAATCAAGCGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGTAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAGttttatcagcaggaagcgtccaaattaaaaagacaaatcagagacattcagaatctaaacaggcacatccttggtgaagctcttagctctctgagtctgaaggaattaaagaacctggagagtagactggagaaaggtttaagcagagttagatccagaaagCATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGATAGCTGAACACGAGAAAGCACAACAACGGCAACAGGATATGATACCGGGAAATGTGTGCGAGTCAACCATACCTCCACAATCATATGACCGCAATTTCTTCCCTGTTAATCTCATAGATTCCAATAATCAATATTCACATCAAGACCAGACTGCTCTTCAACTTGTGTAA 729 0.3361 MEFPNEAIPEGCSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNPESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHEKAQQRQQDMIPGNVCESTIPPQSYDRNFFPVNLIDSNNQYSHQDQTALQLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00236 242 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma14g00236 242 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 Coils Coil 103 126 - -
Gma14g00236 242 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Gma14g00236 242 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma14g00236 242 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Gma14g00236 242 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 13 236 - -
Gma14g00236 242 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Gma14g00236 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gma14g00236 242 Coils Coil 137 157 - -
Gma14g00236 242 PANTHER MADS BOX PROTEIN 13 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00236 Gma-Chr14 2017454 2023740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00236 13 242 MADS-box Gene Family AT2G42830 71.308 6.10e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma14g00236 K-box 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00236 K09264 - gmx:100792224 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00946 18 11623760 11631767 Gma14g00236 14 2017454 2023740 PCT
Gma08g02915 08 45514736 45523241 Gma14g00236 14 2017454 2023740 PCT
Gma14g00236 14 2017454 2023740 Gma18g00946 18 11623760 11631767 PCT
Gma14g00236 14 2017454 2023740 Gma08g02915 08 45514736 45523241 PCT