Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00201 ATGCCTTCGGCTCAAGATCCATTCTACGTTGTCAAGCAAGAAATTCAAGAATCTATTGATAAGCTACAATCTACGTTTCACCAATGGGAAAAGACTGCTGATGCTGGCGAGCGATCCAATCTATCAAAGGAAGTTCTTGGTAGTTGTGAAAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCCTCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGGTTGAAAACCGGAGGAAGTGGACCAGTGATGCTCGCACCCAGGTGAGCACAGCAAAGAAAGCAGTGCAAGCTGGAAAGGGCTTAAACAATGCTAGTCTAAATGGGATGCACAAGGAATTAATGAGGCTTCCTAGTTCTCATCAAACTACATCTAACCAATATGCTGCCCAGGATAATGATGATTTCATAGAGTCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAAGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATAGGAGGTGTTGGACTTACTATACATGAAGAGCTCCTTGCACAGGAAAAGATTATTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGCCTAGATTTTGTCCAAAAAAAGGTGGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATATTGGTCCTCCTTTCTCACAGCTAG 699 0.4263 MPSAQDPFYVVKQEIQESIDKLQSTFHQWEKTADAGERSNLSKEVLGSCESIEWQVDELDKAISVASRDPSWYGIDEVEVENRRKWTSDARTQVSTAKKAVQAGKGLNNASLNGMHKELMRLPSSHQTTSNQYAAQDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILVLLSHS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00201 232 Gene3D - 2 104 - -
Gma14g00201 232 PANTHER SYNTAXIN 1 230 IPR045242 -
Gma14g00201 232 SUPERFAMILY SNARE fusion complex 148 212 - -
Gma14g00201 232 Coils Coil 188 208 - -
Gma14g00201 232 Coils Coil 12 32 - -
Gma14g00201 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 150 212 IPR000727 -
Gma14g00201 232 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Gma14g00201 232 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Gma14g00201 232 CDD SNARE_Qc 153 210 - -
Gma14g00201 232 SMART tSNARE_6 145 212 IPR000727 -
Gma14g00201 232 Gene3D - 157 221 - -
Gma14g00201 232 PANTHER SYNTAXIN PROTEIN 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00201 Gma-Chr14 1693365 1699540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00201 55 229 SNARE and Associated Proteins AT1G28490 67.598 3.00e-81 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00201 K08500 - gmx:100793612 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00201 14 1693365 1699540 Gma02g02739 02 53064008 53067960 GST
Gma18g00830 18 9636771 9640321 Gma14g00201 14 1693365 1699540 PCT
Gma08g02972 08 46225540 46229675 Gma14g00201 14 1693365 1699540 PCT
Gma14g00201 14 1693365 1699540 Gma18g00830 18 9636771 9640321 PCT
Gma14g00201 14 1693365 1699540 Gma08g02972 08 46225540 46229675 PCT