Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00178 atgcggaagggcagaggaggaggagcctcggcggcggcggcggcggcggtgaacggATCCGTTTTAAAGGAGCCTCGGTACCGGGGCGTGCGGAAGAGACCGTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGATGCTGCACGTGCCTACGACACCGCCGCTCGGAATCTCCGAGGTTCCAAGGCCAAAACCAATTTCCCTCTCTCACCTTTTTGCTATCAACACCCCACCACGGATCCTTTCTTCTACGCTGGTTTCCACGACCACCAAAACAACAGCAACAACAACAACGACAACCTTAACAACCCTCAAAGACCAACTTCAAGTGGCATGAGTAGCACCGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCACCACAACCACAACCACCACGACGCCGTTTTTGACCACTACGCGGAGATACCCGCGCACTCCCCCTCTTGTCCCCGAAGACTGCCACAGTGACTGCGACTCTTCCTCCTCCGTCGTTGACGACAGCGACGACAACATCGTTTCCTCGTCGTTTCGACCTCCCTTGCCGTTCGATCTCAACGCGCTGCCGTTTGATGATGATGCTGCCGTCGTGGATGATGATCTACGCTGCACCGCGCTTTGTCTCTGA 669 0.5157 MRKGRGGGASAAAAAAVNGSVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDTAARNLRGSKAKTNFPLSPFCYQHPTTDPFFYAGFHDHQNNSNNNNDNLNNPQRPTSSGMSSTVESFSGPRPPTTTTTTTTPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDSDDNIVSSSFRPPLPFDLNALPFDDDAAVVDDDLRCTALCL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00178 222 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gma14g00178 222 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Gma14g00178 222 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Gma14g00178 222 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Gma14g00178 222 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Gma14g00178 222 MobiDBLite consensus disorder prediction 103 155 - -
Gma14g00178 222 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gma14g00178 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 204 - -
Gma14g00178 222 PANTHER ETHYLENE RESPONSE FACTOR 4 204 - -
Gma14g00178 222 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Gma14g00178 222 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gma14g00178 222 MobiDBLite consensus disorder prediction 99 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00178 Gma-Chr14 1472397 1473809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00178 1 222 AP2-EREBP Transcription Factor Family AT1G50640 60.000 4.67e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma14g00178 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00178 K09286 - gmx:100820249 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00178 14 1472397 1473809 Gma02g02761 02 53242850 53243518 GST
Gma18g00792 18 8875506 8877082 Gma14g00178 14 1472397 1473809 PCT
Gma08g02999 08 46536707 46537339 Gma14g00178 14 1472397 1473809 PCT
Gma14g00178 14 1472397 1473809 Gma18g00792 18 8875506 8877082 PCT
Gma14g00178 14 1472397 1473809 Gma08g02999 08 46536707 46537339 PCT