Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00152 ATGAGGCCAATGCGTTATGATTACATAGTACGTTATGATGGGTTTGTTTTGGAAAAAAACCAAGACAACAAAAAGGTTTTGGAAGCTGTTATTGGGTGCACCCACTGGGTTCTGTCTGAGATTCAACATAAGATGGAGTCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACCGATGACGAACGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGGACAACAGGCCGCGCTCGTGGTTTCGGTTTTGTTGTCTTTGCTGATCCTTCTGCTGCAGAGAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAgttgaagctaagaaagctgttcctagggatgatcagcaaactataaacagacagtctggtagcatccatggatctccgagtcctggacgcaccaaaaagatttttgttggagcttcccggagtgtttggggaaatgggggccagaacaatgctgccaatagtccagtcagccctggcgcttacttGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATGGTGGCACCAATTGGGGTCCATCAGTTCCAACCCAGGGTGGAGGGGCTGCCACTGGGTATAGTACTTGGGGTAACTCTTATGATGGTGGAGATAACAACATCAGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGCCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGGTGATTATGAAGGATCCTATGGGAACTTGTACCGCAATGGTTCAGTTTACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGGTTCGTTTGGTTACGGTGGACTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGATGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCTTAG 975 0.3672 MRPMRYDYIVRYDGFVLEKNQDNKKVLEAVIGCTHWVLSEIQHKMESDLGKLFIGGISWDTDDERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPSAAERVIMDKHIIDGRTVEAKKAVPRDDQQTINRQSGSIHGSPSPGRTKKIFVGASRSVWGNGGQNNAANSPVSPGAYLGSGSGAFGVSIGNGGTNWGPSVPTQGGGAATGYSTWGNSYDGGDNNISLGGGGYGRNSSPSVPQSSTFTAPTGDYEGSYGNLYRNGSVYSDSTWRSAASEIDASGSFGYGGLGGIASDDPVKSSDGFIGNYNVISRQTNRGIAA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00152 324 SMART rrm1_1 51 122 IPR000504 GO:0003723
Gma14g00152 324 MobiDBLite consensus disorder prediction 122 149 - -
Gma14g00152 324 CDD RRM1_hnRNPA_hnRNPD_like 52 122 - -
Gma14g00152 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 126 IPR000504 GO:0003723
Gma14g00152 324 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 45 156 - -
Gma14g00152 324 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 157 324 - -
Gma14g00152 324 SUPERFAMILY RNA-binding domain, RBD 41 148 IPR035979 GO:0003676
Gma14g00152 324 MobiDBLite consensus disorder prediction 130 144 - -
Gma14g00152 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Gma14g00152 324 Gene3D - 50 132 IPR012677 -
Gma14g00152 324 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 157 324 - -
Gma14g00152 324 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 45 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00152 Gma-Chr14 1221978 1228631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00152 52 157 Eukaryotic Initiation Factors Gene Family AT3G16380 27.586 3.10e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00152 K14411 - gmx:100788515 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00152 14 1221978 1228631 Gma14g00152 14 1221978 1228631 ECH
Gma14g00152 14 1221978 1228631 Gma02g02785 02 53462119 53464661 GST
Gma18g00746 18 7957812 7960969 Gma14g00152 14 1221978 1228631 PCT
Gma08g03034 08 46916056 46919106 Gma14g00152 14 1221978 1228631 PCT
Gma14g00152 14 1221978 1228631 Gma18g00746 18 7957812 7960969 PCT
Gma14g00152 14 1221978 1228631 Gma08g03034 08 46916056 46919106 PCT