Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00061 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGGATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAAGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGGGGATTTGGTTTCGTTGTTTTTTCTGACCCAGCTATTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGgttgaggcgaagaaagctgttcctagggatgatcagaacatactgagtagaaacagtggcagcatccatggttctcctggtccaggtcgcactagaaagatatttgttggaggtttagcatcaacagtgacagagagtgatttcaagaaTTATGGAACAAGTTCTGCAAACTCCAATGCATACATTGGATCCGGGAGTGGGAGTGCTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGAGTTCTTCAGCAATTTCTGGGCAGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAATTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCTCTGGTGCCATTTTTGCACCAACATCTTCATACTCTGCATCAAATGGCGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGGAATCGCTACATAG 849 0.3746 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAIAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKNYGTSSANSNAYIGSGSGSAGGNTFGNTGVNWSSSAISGQQGGGNNMSQSSGNLGYGGGDNNYGLGTGGYGRSSGAIFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00061 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gma14g00061 282 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 125 - -
Gma14g00061 282 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 125 - -
Gma14g00061 282 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 124 282 - -
Gma14g00061 282 SUPERFAMILY RNA-binding domain, RBD 4 126 IPR035979 GO:0003676
Gma14g00061 282 Gene3D - 4 88 IPR012677 -
Gma14g00061 282 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gma14g00061 282 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 124 282 - -
Gma14g00061 282 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gma14g00061 282 MobiDBLite consensus disorder prediction 260 282 - -
Gma14g00061 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00061 Gma-Chr14 521133 526054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00061 8 54 C2H2 Transcription Factor Family AT2G19380 44.681 1.15e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00061 K14411 - gmx:100795907 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g00061 14 521133 526054 Gma14g00061 14 521133 526054 ECH
Gma14g00061 14 521133 526054 Gma02g02871 02 54116901 54121567 GST
Gma13g00097 13 2941572 2944723 Gma14g00061 14 521133 526054 PCT
Gma14g00061 14 521133 526054 Gma13g00097 13 2941572 2944723 PCT