Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00020 ATGAAGAGGGAGTGTGGCGAAGCGAGTTCTTGTTCACGCAAGAAGCAGAAGCGGTTAATGGAGGATGCAGGAGCACGTCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGCCACATGAGATGCCACCCAGAGCGTCACTGGAGAGGGATCAATCCTCCGGCCAATGTGGTCAGGAGACAACAAGAACAAGAACAAATGAGCCAGGAAGACCACGAGGTCGCTGCCTCTCTGCTCCTGCTTGCCAACTCCAACGTTCTGGAGAGTGATGGGCACAAGTGCAGCATTTGCCTCAGGGTTTTCTCTACTGGTCAGGCTCTTGGTGGCCACAAGCGCTGTCACTGGGACTCTTCTTCTTCCAAGTCTCTCTCTGTCCTCGACTTCGACTTGAATTTCCCTCCCCCCCTCACTCTCGATTTGAGGTTGGGTCTCTAG 450 0.5489 MKRECGEASSCSRKKQKRLMEDAGARPCTECGKKFWSWKALFGHMRCHPERHWRGINPPANVVRRQQEQEQMSQEDHEVAASLLLLANSNVLESDGHKCSICLRVFSTGQALGGHKRCHWDSSSSKSLSVLDFDLNFPPPLTLDLRLGL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00020 149 Pfam C2H2-type zinc finger 26 50 - -
Gma14g00020 149 Pfam C2H2-type zinc finger 97 121 - -
Gma14g00020 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 48 IPR013087 -
Gma14g00020 149 Gene3D Classic Zinc Finger 27 119 - -
Gma14g00020 149 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Gma14g00020 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 90 - -
Gma14g00020 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 94 141 - -
Gma14g00020 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Gma14g00020 149 SUPERFAMILY beta-beta-alpha zinc fingers 27 119 IPR036236 -
Gma14g00020 149 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Gma14g00020 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 94 141 - -
Gma14g00020 149 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 90 - -
Gma14g00020 149 SMART c2h2final6 97 119 IPR013087 -
Gma14g00020 149 SMART c2h2final6 26 48 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00020 Gma-Chr14 228089 228538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00020 28 149 C2H2 Transcription Factor Family AT4G35280 38.346 2.89e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma14g00020 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00020 - - gmx:102665516 296.975