Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g00012 ATGAATTTGCTTTGCGTTGCATTATTAACATTGATCCTATTACATGGGGCATCAAGAGGACATGATGATGTCGTCAAAATCGGTGCCATATTCACATTAAAAACCATAAACGGACGAGTTTCCAAAATTGCCATCCAAGCTGCTGAGAAAGATGTGAATTCCGATCCTCGCATCCTTGGGGGTCGTAAATTGTCCATAACCATCCATGATTCCAACTTCAGTGGTTTTCTTGGCTTTATTGGGGCCCTCAAGTTCTTGGTGACCGACACAGTAgctataattggtccacaaagttcagtaatggcccatgtgctttcgcatcttgcaaatgagctccatgttcccctactctcctccacggctctggaccccaccctaacacctctccagtatccttattttctacaaacagcaccctccgatcacttccacatgaatgccgttgccgacctcattagctatttcggttggagagaagtcatagcagtgttcagcgacgatgatcagagtcggaatgggataacggttttgggggataaacttgctgagagacgctgtaagttgtcttacaaagcagcactgcctcctgatccgACCGCCACTCCATCCCATGTTACTGGTCAGTTAGTGAAGATCAAGAGTATGGAGTCTCGAGTTATCGTCTTAAACACCTTCGCGCAAACTGGTCTCTTGGTTTTTGAGGTGgctcaaaagctaggaatgatgtccaaagggtatgtctggatagctactgcttggttatcaactgttttagactcaactacttcactaccttcaaatacttgtaactcaattcaaggagttattacctttcgccctcacacccctcattccagaaaaaaacaggcatttatctcaaggtggaaacacatcagtaatggctcaattgggttaaatccatacggcctctatgcatatgattctgtttggatgattgctgaggcactcaaattgttttttgatcggaatggtaccatttccttctctaacaatacaaatttaagtggtacgagggaagagactctggatttcggtgctttgagcgtttttgatggagggaaggagttacttgataacatattgcgcattaacatgactggattgactggacctattcaatttggttcagatagatctcctctaaatccatcatatgacattcttaatgtaattgctactggttataggagagtcggctactggtctaattactctggcctctctgtaataacccctgagaaacttcacgcagagcctgccaatcgttcaatttcaagccagcatctaaaccgtgtcatatggcctggaaatacaacagaaaagcctcgtggatgggttttcccaaataatgggaggcaactgagaattggaattcccaacagagttagctatcaagacatggtctcccaaataaatggcaccaatgcagttcaaggatattgcatagatatattcctagctgccattaaattgcttccctatgcagttcaatacaagttcattctgtttggagatggacacaataacccaagctactacaatcttgtcaacatgattacttctgatgtttttgatgctgctgtaggtgacattgcgattgtcactgaccgaacaaagattgtggattttactcaaccatatatagagtcggggctagttgtggttgctccagtaaaaaaattgaagtcaaatgcttgggctttcttgcgaccatttactccacagatgtggggtgtcactgcattttttttcctttttgttggagcagtggtgtggattcttgaacatagaacaaacgatgagtttcgggggtcaccgagggaacagatagttacagttctttggtttagtttctcaaccatgttctttgcgcacagagaaaacacagttagtccacttggtcgagtggtgttgataatctggctttttgtggttctgataatcaattcaagctacactgcaagcttgacatcaattctcactgtgcaacagctgtcctcacccataacaggaattgatagcttgatatccagcagtgatcgtataggattccaagtaggctcatttgctgcaaactatctcactgagcaactcaacatccccaaacatagacttgttcctcttggctcaccagaagaatatgctgttgcccttgaaagcggaactgttgcagctgtggtggatgaacgaccctatgtagaactcttcctttcaaaccactgccaattctcaattaggggccaagagttcaccaaaagtggatggggatttgcattcccgagagactctcctcttgcaattgatatgtcaactgcgattctaaccctatctgagaatgGAGCATATCCAAGAGAGTACAAGAGGACATTTCCCAAGAGGCTCCTTGACCTTGTGAGAGACAAACCAGCAAGAGTGGAGATGGCGACGTCGACGTGCTTCCTGTGTCCGTCTACGGCGAGTTTGAAAGGCAGGGCCAGATTCAGAATCAGAATCAGATGCAGCAGCAGCGTGTCGGTCAATATTCGAAGGGAGCCCGAACCTGTAACGACGCTGGTGAAAGCGTTTGCTCCCGCCACGGTGGCGAATCTAGGTCCAGGCTTCGACTTCCTAGGCTGCGCCGTGGACGGACTCGGAGACATTGTGTCGGTGAAGGTTGACCCACAGGTTCACCCTGGCGAGATATGCATATCCGACATCAGCGGCCACGCCCCAAACAAGCTCAGCAAAAACCCTCTCTGGAACTGCGCCGGCATCGCCGCCATTGAAGTCATGAAAATGCTCTCCATTCGATCCGTCGGCCTCTCCCTCTCCCTGGAGAAGGGCCTGCCTTTGGGAAGCGGTCTGGGATCCAGCGCCGCCAGCGCCGCCGCGGCCGCCGTGGCGGTGAACGAGCTGTTTGGGAAGAAATTAAGCGTGGAGGAGCTGGTTCTGGCATCACTGAAATCGGAAGAGAAGGTGTCGGGGTATCACGCGGACAACGTGGCGCCATCGATAATGGGGGGTTTTGTGCTGATCGGGAGCTACTCGCCGCTGGAGTTGATGCCGTTGAAGTTTCCGGCAGAGAAGGAGCTGTATTTCGTGCTGGTGACGCCTGAGTTCGAGGCCCCGACGAAGAAGATGCGGGCAGCGCTGCCTACGGAGATCGGGATGCCGCACCACGTGTGGAACTGCAGCCAGGCAGGTGCTCTGGTGGCGTCGGTGCTGCAGGGCGACGTGGTTGGGTTGGGGAAGGCATTGTCCTCTGACAAGATCGTTGAGCCAAGGCGTGCCCCCTTGATTCCTGGCATGGAGGCTGTCAAGAGGGCTGCCATTCAGGCCGGTGCTTTTGGCTGTACCATCAGCGGCGCCGGCCCTACCGCCGTCGCCGTCATTGACGACGAGCAAACTGGACACCTCATTGCCAAACACATGATTGACGCTTTTCTCCATGTTGGCAATTTGAAGGCTTCTGCAAATGTCAAGCAGCTTGATCGCCTTGGTGCTAGACGCATTCCAAATTGA 3522 0.2391 MNLLCVALLTLILLHGASRGHDDVVKIGAIFTLKTINGRVSKIAIQAAEKDVNSDPRILGGRKLSITIHDSNFSGFLGFIGALKFLVTDTVAIIGPQSSVMAHVLSHLANELHVPLLSSTALDPTLTPLQYPYFLQTAPSDHFHMNAVADLISYFGWREVIAVFSDDDQSRNGITVLGDKLAERRCKLSYKAALPPDPTATPSHVTGQLVKIKSMESRVIVLNTFAQTGLLVFEVAQKLGMMSKGYVWIATAWLSTVLDSTTSLPSNTCNSIQGVITFRPHTPHSRKKQAFISRWKHISNGSIGLNPYGLYAYDSVWMIAEALKLFFDRNGTISFSNNTNLSGTREETLDFGALSVFDGGKELLDNILRINMTGLTGPIQFGSDRSPLNPSYDILNVIATGYRRVGYWSNYSGLSVITPEKLHAEPANRSISSQHLNRVIWPGNTTEKPRGWVFPNNGRQLRIGIPNRVSYQDMVSQINGTNAVQGYCIDIFLAAIKLLPYAVQYKFILFGDGHNNPSYYNLVNMITSDVFDAAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVKKLKSNAWAFLRPFTPQMWGVTAFFFLFVGAVVWILEHRTNDEFRGSPREQIVTVLWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSDRIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAVALESGTVAAVVDERPYVELFLSNHCQFSIRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGAYPREYKRTFPKRLLDLVRDKPARVEMATSTCFLCPSTASLKGRARFRIRIRCSSSVSVNIRREPEPVTTLVKAFAPATVANLGPGFDFLGCAVDGLGDIVSVKVDPQVHPGEICISDISGHAPNKLSKNPLWNCAGIAAIEVMKMLSIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNELFGKKLSVEELVLASLKSEEKVSGYHADNVAPSIMGGFVLIGSYSPLELMPLKFPAEKELYFVLVTPEFEAPTKKMRAALPTEIGMPHHVWNCSQAGALVASVLQGDVVGLGKALSSDKIVEPRRAPLIPGMEAVKRAAIQAGAFGCTISGAGPTAVAVIDDEQTGHLIAKHMIDAFLHVGNLKASANVKQLDRLGARRIPN 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g00012 1173 CDD GluR_Plant 459 787 - -
Gma14g00012 1173 Pfam GHMP kinases C terminal 1072 1142 IPR013750 -
Gma14g00012 1173 Pfam Receptor family ligand binding region 43 397 IPR001828 -
Gma14g00012 1173 SUPERFAMILY Voltage-gated potassium channels 585 668 - -
Gma14g00012 1173 Gene3D - 447 571 - -
Gma14g00012 1173 Pfam GHMP kinases N terminal domain 943 1008 IPR006204 GO:0005524
Gma14g00012 1173 PRINTS Homoserine kinase signature 866 881 - -
Gma14g00012 1173 PRINTS Homoserine kinase signature 995 1008 - -
Gma14g00012 1173 PRINTS Homoserine kinase signature 956 971 - -
Gma14g00012 1173 PRINTS Homoserine kinase signature 1115 1130 - -
Gma14g00012 1173 PRINTS Homoserine kinase signature 1035 1052 - -
Gma14g00012 1173 TIGRFAM thrB: homoserine kinase 861 1168 IPR000870 GO:0004413|GO:0005524|GO:0006566
Gma14g00012 1173 Gene3D - 1028 1158 IPR036554 -
Gma14g00012 1173 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 791 - -
Gma14g00012 1173 Gene3D - 43 389 - -
Gma14g00012 1173 Gene3D - 572 701 - -
Gma14g00012 1173 Gene3D - 725 762 - -
Gma14g00012 1173 Pfam Bacterial extracellular solute-binding proteins, family 3 479 795 IPR001638 -
Gma14g00012 1173 SUPERFAMILY GHMP Kinase, C-terminal domain 1030 1144 IPR036554 -
Gma14g00012 1173 CDD PBP1_GABAb_receptor_plant 26 416 IPR044440 -
Gma14g00012 1173 Gene3D - 763 789 - -
Gma14g00012 1173 Pfam Ligand-gated ion channel 582 745 IPR001320 GO:0015276|GO:0016020
Gma14g00012 1173 PANTHER GLUTAMATE RECEPTOR 3.6 21 791 - -
Gma14g00012 1173 Gene3D - 140 414 - -
Gma14g00012 1173 ProSitePatterns GHMP kinases putative ATP-binding domain. 949 960 IPR006203 GO:0005524
Gma14g00012 1173 SUPERFAMILY Periplasmic binding protein-like II 439 797 - -
Gma14g00012 1173 Gene3D - 854 1027 IPR014721 -
Gma14g00012 1173 SMART GluR_14 460 799 IPR001320 GO:0015276|GO:0016020
Gma14g00012 1173 SUPERFAMILY Ribosomal protein S5 domain 2-like 859 1016 IPR020568 -
Gma14g00012 1173 Hamap Homoserine kinase [thrB]. 859 1171 IPR000870 GO:0004413|GO:0005524|GO:0006566
Gma14g00012 1173 SUPERFAMILY Periplasmic binding protein-like I 20 453 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g00012 Gma-Chr14 125692 132292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g00012 15 799 Ion Channels AT2G17260 63.797 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g00012 K05387 - gmx:100793969 1519.98