Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03339 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCATCACCATCTTCATTTGCAACCAACCGGAGAATCCTCCTTTTCCTGTGAAATTATCCCTATTCCTCCTGCTGCAGCTACTTTTAACGATGATGATTTACAAAACGTCCGGGTTGATGAGACTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACACAAAAGTACGTCCACAGATCATGTCTCGATAATTGGAGATCCACCAAGGAGGGTTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGAGATCATGCATTCATTTTCATAATTGTTCAGCTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTTGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAGCGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAGCTAAGGATGTTGGGCCTTTACTAA 780 0.4154 MQLASNGDKEECSESEPILNHHHLHLQPTGESSFSCEIIPIPPAAATFNDDDLQNVRVDETCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03339 259 SMART ringv_2 71 120 IPR011016 GO:0008270
Gma13g03339 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Gma13g03339 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Gma13g03339 259 SUPERFAMILY RING/U-box 67 123 - -
Gma13g03339 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 124 IPR013083 -
Gma13g03339 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 258 - -
Gma13g03339 259 PANTHER OS02G0132300 PROTEIN 2 258 - -
Gma13g03339 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03339 Gma-Chr13 47341807 47346886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03339 59 218 C3H Transcription Factor Family AT1G50440 75.625 3.91e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03339 - - gmx:100808123 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03339 13 47341807 47346886 Gma13g03339 13 47341807 47346886 ECH
Gma13g03339 13 47341807 47346886 Gma15g00012 15 119440 124529 GST