Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03329 ATGAAGCTCACCGTGAAGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATGGTAAGGTTTTGAAAGATGAAACTACTTTATCCGACAATAAGGTCTCTGAGGATGGTTTTCTTGTTGTCATGCTTAGTAAGGGTAAAACCTTGGGATCTGCTGGCATTTCATCAACTCAGTTTGCTAGCAACCCACCTACAACTGTATCAACACCAAATTCCACGCCTCTAGTTCAACCTCAATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAATGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAGTAATCTGGAGCAGACTATTCAGCAACTTATGGACATGGGTGGCGGCAGTTGGGACAGAGATACAGTTACTTGTGCTCTTCGAGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGTAGCAGCAGAAATTGCTGTGCCAGCTGCTTCTTACCCAATCAGTCAGACAACAGAAACAGGTGGGGCCTCTGTCGGAGCTGTTCCTGGGGTCCCTAATTCATCTCCCTTGAATATGTTTCCACAGGAAACAATTTCTGGTGCTGGAGCTGAAATTGGATCGCTTGACTTTCTTAGAAACAATCCCCAGTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAACTTGGAAAGCAGAATCCTAGTCTCTTAACACTAATTCAAGAGCATCATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGTGATATATTTGATCAACCTGAGCAAGATATGCCTCATGCCATCAATGTGACGCCAGCAGAGCAGGAGGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTCATCGAGGCATTTTTGGCATGTGACCATGACGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGAGATTTTGAGGGTTAA 1104 0.4429 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKVSEDGFLVVMLSKGKTLGSAGISSTQFASNPPTTVSTPNSTPLVQPQSANNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPAASYPISQTTETGGASVGAVPGVPNSSPLNMFPQETISGAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFEG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03329 367 Pfam UBA/TS-N domain 144 182 IPR015940 -
Gma13g03329 367 Pfam UBA/TS-N domain 323 358 IPR015940 -
Gma13g03329 367 SMART uba_6 144 184 IPR015940 -
Gma13g03329 367 SMART uba_6 323 360 IPR015940 -
Gma13g03329 367 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 366 - -
Gma13g03329 367 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gma13g03329 367 SMART CBM 240 283 IPR006636 -
Gma13g03329 367 SMART ubq_7 1 75 IPR000626 GO:0005515
Gma13g03329 367 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 366 - -
Gma13g03329 367 Gene3D - 137 187 - -
Gma13g03329 367 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gma13g03329 367 SUPERFAMILY UBA-like 302 364 IPR009060 GO:0005515
Gma13g03329 367 CDD UBA1_Rad23_plant 138 187 - -
Gma13g03329 367 SUPERFAMILY XPC-binding domain 241 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma13g03329 367 Gene3D - 314 362 - -
Gma13g03329 367 MobiDBLite consensus disorder prediction 86 117 - -
Gma13g03329 367 Gene3D - 232 298 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gma13g03329 367 Gene3D - 1 77 - -
Gma13g03329 367 SUPERFAMILY UBA-like 141 191 IPR009060 GO:0005515
Gma13g03329 367 TIGRFAM rad23: UV excision repair protein Rad23 1 366 IPR004806 GO:0006289
Gma13g03329 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Gma13g03329 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Gma13g03329 367 PRINTS DNA repair protein Rad23 signature 268 290 IPR004806 GO:0006289
Gma13g03329 367 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Gma13g03329 367 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Gma13g03329 367 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Gma13g03329 367 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gma13g03329 367 CDD Ubl_Rad23 1 74 - -
Gma13g03329 367 Pfam XPC-binding domain 242 297 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03329 Gma-Chr13 47240649 47245578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03329 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 8.64e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03329 K10839 - gmx:100804038 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03329 13 47240649 47245578 Gma13g03329 13 47240649 47245578 ECH
Gma13g03329 13 47240649 47245578 Gma15g00021 15 206620 214585 GST
Gma13g03329 13 47240649 47245578 Gma07g00025 07 221325 227889 PCT
Gma13g03329 13 47240649 47245578 Gma08g02059 08 18483067 18489612 PCT
Gma07g00025 07 221325 227889 Gma13g03329 13 47240649 47245578 PCT
Gma08g02059 08 18483067 18489612 Gma13g03329 13 47240649 47245578 PCT