Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03327 ATGAAGAAGATGAATAATGAGTCCTCAACGCGCACTTACAGTTCTCTCTATTTCAATCCCCTCACCACCACCACCACTGCCAAACCCCACCACACCTTTCTCTTTGACAAGGAAAACTCCAACGCCAATGGCTCCTCTGTTCTACCCAAGCCCAGGCCTTTCAGGTCTCTTTCCACTGACATGATCTTGAAGCCCTGCTCTCTTGAATCCCAGTCTCTGAATCTCAACATTTGGGACTACTCTGACTCCGAATCAGGTCCTGCTTCTTCCTGGTCCACACTGGCCAACAAGTCCTTGATCTGTAGACCCTTGCCTTTAGATATCGGAAGCTGCACTTGCTTTATCGTCAATGAACCACCTCCCCAGGGACTATCAGGTGGCACTTTCTTCTCTCTTTACACCAACGAAGGTCATGGACGCCAGAATAGGAAGCTAGCCGTTGCCCACCATAAGCGCCGCAATGGCAGGTCTCACTTCATCCTCGCTCAGAATCTCAGAGGACTCCTCTCCCATTCAGATGATTCTTTTCTTGGCACCGTAACAGCTAACCTCATCGGCTCTAAATACCACATTTGGGATCAGGGATATCTTCATAATTCCCGTGCTAAACAACCAAAGCCACCTCTTGCTGTTGTCACTTATATTCCTACTGTCACAACATGCACAGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAAACTATGTCACTCAAGAGCACAACCCAGGTACAACATATAAAAGGATTGCCATTCAATTGGGAGGGAAAACCGGACAAAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATACGAGCTTGACTTTAGAGATAATAAAGGAAAGGCAGGAGGAGGATTTAGAATCCAAAGATCAGTAAAAAATTTCCAGCTGACTTTAGAGGAGAATGGGAGGCAAACGATCCTGCAGCTAGGGAGGGTGGAAAAGTCAAAATTCGTTATGGACTACAGCTATCCTTTGACAGGCTACCAGGCGTTTTGCATATGTTTGGCTTCCATGGATGCAAAACTTTGTTGCACACTCTAG 1071 0.4603 MKKMNNESSTRTYSSLYFNPLTTTTTAKPHHTFLFDKENSNANGSSVLPKPRPFRSLSTDMILKPCSLESQSLNLNIWDYSDSESGPASSWSTLANKSLICRPLPLDIGSCTCFIVNEPPPQGLSGGTFFSLYTNEGHGRQNRKLAVAHHKRRNGRSHFILAQNLRGLLSHSDDSFLGTVTANLIGSKYHIWDQGYLHNSRAKQPKPPLAVVTYIPTVTTCTGSHRSMRAYIPKHQTMSLKSTTQVQHIKGLPFNWEGKPDKVHQLFSKVPLYNKISKQYELDFRDNKGKAGGGFRIQRSVKNFQLTLEENGRQTILQLGRVEKSKFVMDYSYPLTGYQAFCICLASMDAKLCCTL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03327 356 Gene3D Tubby Protein; Chain A 91 355 IPR025659 -
Gma13g03327 356 SUPERFAMILY Tubby C-terminal domain-like 88 355 IPR025659 -
Gma13g03327 356 PANTHER TUBBY-LIKE PROTEIN 8 70 354 - -
Gma13g03327 356 Pfam Tub family 102 349 IPR000007 -
Gma13g03327 356 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Gma13g03327 356 PRINTS Tubby superfamily signature 292 308 IPR000007 -
Gma13g03327 356 PRINTS Tubby superfamily signature 312 331 IPR000007 -
Gma13g03327 356 PRINTS Tubby superfamily signature 333 355 IPR000007 -
Gma13g03327 356 PANTHER TUBBY-RELATED 70 354 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03327 67 246 TUB Transcription Factor Family AT1G16070 56.354 1.48e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma13g03327 Tub 2.5e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03327 K19600 - gmx:100803500 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03327 13 47234525 47236081 Gma13g03327 13 47234525 47236081 ECH