Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03313 ATGTCAGGTGAAGAGGTAGCTGTTGCAGTTGAGGTACCTGCTACTTCAATTCCAGGTGAGCCAATGGACATCATGACTGCTCTACAGCTTGTGCTGAGAAAATCTCTGGCCTATGGTGGTCTTGCACGAGGTCTTCATGAAGGTGCCAAGGTGATCGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCTCTTTGTGCAGAGCACAATGTTAGTCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCAGAGGGAAAGGCTCGGAAGGTAACTGGTTGCTCATGTGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCATATAATGTTGTTCTGCAGCATGTGAAAGCCAACTGA 426 0.4695 MSGEEVAVAVEVPATSIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03313 141 Gene3D - 5 141 IPR029064 -
Gma13g03313 141 SUPERFAMILY L30e-like 21 139 IPR029064 -
Gma13g03313 141 PRINTS Ribosomal protein S12E family signature 31 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma13g03313 141 PRINTS Ribosomal protein S12E family signature 45 61 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma13g03313 141 PRINTS Ribosomal protein S12E family signature 86 107 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma13g03313 141 PRINTS Ribosomal protein S12E family signature 111 124 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma13g03313 141 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma13g03313 141 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 120 IPR004038 -
Gma13g03313 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 140 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gma13g03313 141 PANTHER 40S RIBOSOMAL PROTEIN S12 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03313 Gma-Chr13 47088368 47090298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03313 17 141 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 1.68e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03313 K02951 - gmx:100499723 279.641