Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03310 ATGATTTGTAGATTCATAGAGGAGAAAGCCGCAAAAGACGATTATATAAATCAGTGTTACAAGCCTCTCCGTGACCACTTCACTTTCTCAGATTCTCAAAGACGCTTCACGAACAAGTTTGAAGCAATCTCCATCCATATCATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTTTCTGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTGGGAACGTTTGAAACCGCAGAGGATGCAGCTAGAGCGTACGATGAAGCGGCAAGGTTGATGTGTGGGCCAAAAGCACGCACCAATTTCCCTTACAATCCCAATGAGCCACTTTCATCTTCATCGAAGCTCCTCTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCCCTTCAAATGAGCAAGCAGAAACAATCTCAGACAGAGCCTCATCAAGGATCATCCAGCGACTCAGGCAATGCCATTGCGGGAACAAGTTCAGACAACACCGGCTTTAGATGGCCAGAAGAGGAAGCACAAGTTGAAGTGCCACCAGCACAACAGCAACAATTTCAGCCAGTTCTTCAAGATGATCACATTGAACAGATGATACAGGAGCTGCTTGATTATGGCTCAATGGAGCTTAGTTTTGTTGACTCAGCCTAA 681 0.4699 MICRFIEEKAAKDDYINQCYKPLRDHFTFSDSQRRFTNKFEAISIHIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPLSSSSKLLSATLTAKLHKCHMASLSLQMSKQKQSQTEPHQGSSSDSGNAIAGTSSDNTGFRWPEEEAQVEVPPAQQQQFQPVLQDDHIEQMIQELLDYGSMELSFVDSA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03310 226 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Gma13g03310 226 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Gma13g03310 226 MobiDBLite consensus disorder prediction 143 178 - -
Gma13g03310 226 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Gma13g03310 226 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Gma13g03310 226 PANTHER ETHYLENE RESPONSE FACTOR 48 222 - -
Gma13g03310 226 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Gma13g03310 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 222 - -
Gma13g03310 226 MobiDBLite consensus disorder prediction 143 196 - -
Gma13g03310 226 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Gma13g03310 226 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Gma13g03310 226 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03310 Gma-Chr13 47046723 47047517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03310 48 223 AP2-EREBP Transcription Factor Family AT5G25190 66.484 1.62e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g03310 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03310 - - gmx:100812021 407.142