Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03309 ATGGGAAGTCTCGAAAACATCAAGAACGAGACAGTTGATCTCGAGCGGATACCTGTTGATGAAGTGTTCCGAGAACTGAACTGTTCGAAGGAAGGTCTCTCAAATGAGGAAGGCCAAAAGAGGTTGCAAGTTTTTGGACCCAACAAGTTGGAAGAAAAGAAGGCAATGCAATATCAACAATTCATTCATTCCTATTCCTATTCCTGTTCCTACTATAATTACATCAAGTTGCTGAAATTCTTGGGTTTTATGTGGAACCCTCTCTCATGGGTGATGGAAGCCGCCGCCATCATGGCAATTGTATTGGCAAACGGAGGGGGTGAGCCACCGGACTGGCAGGACTTTGTGGGAATCATGGTGTTGCTAGTAGTGAACTCAACGATCAGTTTTATAGAAGAAAACAACGCGGGGAATGCTGCTGCAGCGTTGATGGCAGGGCTTGCTCCGAAAACGAAGGTTTTGAGAGATGGAAGGTGGTCAGAGGAGGAGGCTTCAATACTGGTACCGGGAGACATAATCAGCATCAAATTAGGAGACATAATCCCAGCTGATGCTCGTCTCTTGGAAGGAGATCCCCTCAAGATCGATCAATCCGCACTCACCGGCGAGTCCTTGCCTACAACCAAGCACCCTGGCGATGAAATCTTCTCCGGCTCCACCGTCAAGCAAGGAGAGATTGAGGCCGTCGTCATCGCCACTGGGGTCCACACCTTCTTCGGCAAGGCTGCTCATTTGGTCGACAGCTGCAACCAAGTTGGCCATTTCCAGAAGGTCTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTGTTGGCATGATCATTGAGATTGTTGTCATGTATCCAATTCAGCACCGCAAGTATAGGAGTGGAATTAACAATCTCCTGGTTCTCCTCATCGGAGGGATTCCCATTGCCATGCCAACAGTGTTGTCGGTCACAATGGCCATCGGTTCCCACAGGCTGTCGGAGCAAGGTGCTATCACCAAGAGGATGACGGCCATTGAGGAGATGGCTGGAATGGATGTTTTGTGCAGTGACAAGACTGGCACTCTCACACTCAACAAGCTTACGGTAGACAAGAATTTGATTGAGGTTTTCGCAAGAGATGCCGACAAGGATACAGTGATGTTGCTTGGAGCTAGGGCCTCCAGGGTCGAGAACCAAGATGCCATTGATGCTTGCATTGTTGGGATGTTGGGCGATCCAAAGGAGGCCAGAGATGGGATCAAAGAGGTGCATTTCCTACCCTTTAATCCAGTGGACAAGCGCACCGCCATAACATACATAGACACTGAGGGTAACTGGCACCGAGTAAGCAAAGGTGCACCTGAGCAGATTATCGAGCTTTGCAAGCTTCGGGAAGATGTCAAGAAGAAGGCTCTTTCCATCATTGATAAGTTTGCTGATCGCGGTCTTCGTTCCCTTGCTGTTGCCAAACAAGAAGTGCCAGAAAAAAGTAAGGAGAGTGCAGGAGGACCGTGGACGTTTGTTGGTTTGCTGCCACTTTTTGACCCACCAAGGCATGACAGTGCTGAGACCATAAGGCGTGCTCTCAATCTGGGAGTGAACGTTAAGATGATCACTGGTGATCAACTTGCTATTGGTAAAGAAACTGGTCGCAGGCTTGGCATGGGAAGCAACATGTACCCTTCTTCCTCTCTCCTTGGTGAGCACAAGGATGAGTCCATTGCTGGCCTTCCAGTCGATGAGCTTATTGAGAAGGCTGATGGCTTTGCCGGTGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAGACTTCAAGATAGGAAGCACATATGTGGGATGACAGGAGACGGTGTGAACGATGCTCCTGCGCTGAAAAGGGCTGACATTGGAATTGCTGTGGCGGATGCAACCGATGCAGCTCGAGGTGCTTCTGACATTGTCCTGACGGAGCCTGGCTTGAGTGTGATTGTGAGTGCAGTGTTGACAAGCAGAGCCATCTTCCAGAGAATGAAGAACTATACCATATATGCTGTCTCTATAACAATCCGAATAGTGTTGGGCTTTATGCTGCTTGCTCTCATCTGGAAGTTTGACTTCTCACCTTTTATGGTTTTGATCATTGCCATACTCAATGATGGCACCATCATGACCATTTCCAAGGATAGGGTCAAGCCATCTCCTGTGCCAGATTCATGGAAGCTCAGAGAGATTTTTGTTACTGGAATTGTGCTTGGTACCTACCTCGCTGTCATGACTGTTGTCTTCTTCTGGGCTGCTCATGCATCTGATTTTTTCTCGGATAAATTTGGCGTGAGATCCATCAGGGAGAACTACAGTGAGCTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAGGCTCTTATCTTTGTTACTCGGTCAAGGAGCTGGTCTTATGTTGAACGTCCTGGCATGTTTCTTCTTGTTGCCTTTTTCATAGCACAACTGATTGCCACGGTGATAGCTGTGTATGCAAACTGGGAATTTGCAAAGATGAAAGGGATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTATTTTCTACATACCCATGGATATACTCAAGTTCATCATCCGATATGCATTGACTGGGAAGGCATGGAATAATATAACTGAGAATAGGGTTGCTTTCACCACAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCACAATGGGCTGCAGCACAACGCACATTGCATGGCCTGAATCCACCTGAAACGGAGGAAATGTTGAATGAAAAGAACAACTACAGGGAATTGTCCGAACTTGCAGAACAAGCCAAGAAGCGTGCTGAAGTTGCAAGGCTAAGGGAGCTTCACACACTTAAAGGCCATGTTGAGTCTGTCGTCAAACTCAAGGGACTTGACATTGAGACAATGCAGCAACACTACACCGTTTGA 2907 0.4757 MGSLENIKNETVDLERIPVDEVFRELNCSKEGLSNEEGQKRLQVFGPNKLEEKKAMQYQQFIHSYSYSCSYYNYIKLLKFLGFMWNPLSWVMEAAAIMAIVLANGGGEPPDWQDFVGIMVLLVVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEEEASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPTTKHPGDEIFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSCNQVGHFQKVLTAIGNFCICSIAVGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFARDADKDTVMLLGARASRVENQDAIDACIVGMLGDPKEARDGIKEVHFLPFNPVDKRTAITYIDTEGNWHRVSKGAPEQIIELCKLREDVKKKALSIIDKFADRGLRSLAVAKQEVPEKSKESAGGPWTFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAGLPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLREIFVTGIVLGTYLAVMTVVFFWAAHASDFFSDKFGVRSIRENYSELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGMFLLVAFFIAQLIATVIAVYANWEFAKMKGIGWGWAGVIWLYSIIFYIPMDILKFIIRYALTGKAWNNITENRVAFTTKKDYGKGEREAQWAAAQRTLHGLNPPETEEMLNEKNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETMQQHYTV 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03309 968 Gene3D - 358 505 IPR023299 GO:0000166
Gma13g03309 968 PRINTS P-type cation-transporting ATPase superfamily signature 346 360 - -
Gma13g03309 968 PRINTS P-type cation-transporting ATPase superfamily signature 500 511 - -
Gma13g03309 968 PRINTS P-type cation-transporting ATPase superfamily signature 628 640 - -
Gma13g03309 968 PRINTS P-type cation-transporting ATPase superfamily signature 605 624 - -
Gma13g03309 968 PRINTS P-type cation-transporting ATPase superfamily signature 196 210 - -
Gma13g03309 968 PRINTS P-type cation-transporting ATPase superfamily signature 522 532 - -
Gma13g03309 968 Gene3D - 343 642 IPR023214 -
Gma13g03309 968 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 75 823 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gma13g03309 968 SFLD p-type atpase 328 657 IPR044492 -
Gma13g03309 968 SMART Cation_ATPase_N_a_2 13 104 IPR004014 -
Gma13g03309 968 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 3 947 - -
Gma13g03309 968 PANTHER CALCIUM-TRANSPORTING ATPASE 3 947 - -
Gma13g03309 968 SUPERFAMILY HAD-like 342 652 IPR036412 -
Gma13g03309 968 Gene3D - 111 832 - -
Gma13g03309 968 Gene3D - 917 968 - -
Gma13g03309 968 Pfam Cation transporter/ATPase, N-terminus 17 64 IPR004014 -
Gma13g03309 968 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 580 690 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 368 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 Pfam E1-E2 ATPase 148 325 - -
Gma13g03309 968 Pfam haloacid dehalogenase-like hydrolase 342 619 - -
Gma13g03309 968 PRINTS H+-transporting ATPase (proton pump) signature 636 661 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 PRINTS H+-transporting ATPase (proton pump) signature 577 593 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 PRINTS H+-transporting ATPase (proton pump) signature 777 798 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 PRINTS H+-transporting ATPase (proton pump) signature 462 480 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 PRINTS H+-transporting ATPase (proton pump) signature 605 621 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g03309 968 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 863 IPR023298 -
Gma13g03309 968 SUPERFAMILY Calcium ATPase, transduction domain A 149 246 IPR008250 -
Gma13g03309 968 SFLD Haloacid Dehalogenase 328 657 - -
Gma13g03309 968 Coils Coil 912 939 - -
Gma13g03309 968 ProSitePatterns E1-E2 ATPases phosphorylation site. 348 354 IPR018303 -
Gma13g03309 968 Gene3D - 149 233 - -
Gma13g03309 968 CDD P-type_ATPase_H 32 858 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03309 Gma-Chr13 47038200 47042366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03309 3 968 Primary Pumps ATPases AT2G07560 81.988 0.0 1612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03309 K01535 - gmx:100796240 1806.19