Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03304 ATGGAGCAATCATGGGAGAATTGGCCTCTTGATATGGGAATGGAGGAAGACAGGGATCTGAGGGATGAGGAGGAGTTCCTGAGAAACATCCTCAGTGAACCTTCTGAGAGTGAGATGGTAACCGTTGGGTCAGCCAAAAGGCCTCCGAGGACATACATTTTGTCTTTTGATAACTCCACCATAATACCAGCTACTCCTGAACCCACTTCCAGAAAACGCACACGCCAGCCACAAAATCTCAACTTAGAACCAATTAAACCAAACCCCAACACCCAGCCTGGAAAGAGGGGTAGAAGCTGTTCCCAGACTCTGGATCACATTATGGCCGAAAGAAAAAGGAGACAGGAACTCACCCAGAAGTTCATTGCTCTTTCAGCCACTATCCCTGGCTTGAAGAAGACGGACAAGAGTTCTATACTTGGCGAAGCAATTGATTACGTGAAACAACTTCAAGAACGCGTGACGGAGCTTGAACAGAGAAACATGAGAGGGAAAGAATCAATGATAATCCTCAAGAAGAGTGAAGTGTGTAACTCAAGTGAAACAAATTCTGAGGATTGCTGTAGAGCCAGCGAAATGCTCCCTGATGTTGAAGCAAGAGTGATGGAGAATGAGGTACTCATTGAGATCCATTGCGAGAAGGAAGATGGGGTTGAGCTCAAAATATTGGACCACCTTGAAAATCTTCAACTCTGTGTCACCGCCAGCAGCGTATTGCCCTTTGGGAATTCAACTCTTGGTATTACTATTATCGCTCAGATGGGTGACGCGTACAAAATGAAGgcccctaccTTCACTCCCTTCCACTTCTCCTCCATCGACGAAAAAATCTCGTGCGTCGTCGTCGACGGCGGCCTAGTGATGAACAATCCAGCAGTAGCTGTCGTCACGCACGTCCTCCACAACAAGTGCGATTTCCCGTCGGTGAACGGCATGGAGGATCTCCTCGTCCTGTCCATCGGAAACAGAGCTCAGGCAAAGAGAATGAACAACGCCGGTGAGTGCTCGACGTCGACAGTGGTTGACATTGCGCTCGACGGCGTTTTCGAGACCACTGACCAGATGCTAGGAAATGCCTTCTGTTGGAACCGTACGGACTATGTCAGGATTCAAGACGAGGAGATCTTGCACGCCGTTCATCGATGGGAAATCGTGCTTGTTGTGGAGGACGTGCGTGACGGCAGCTGCTGTCAGATTGTTCATCACCAGGCCATCGTCGACGGAGGAGAAGTGGAAGGGAGTGAAGAGGCCAGGGGTCGCCGACGGTGCGAGGTGCGGTCCTCGcaacaataa 1293 0.4919 MEQSWENWPLDMGMEEDRDLRDEEEFLRNILSEPSESEMVTVGSAKRPPRTYILSFDNSTIIPATPEPTSRKRTRQPQNLNLEPIKPNPNTQPGKRGRSCSQTLDHIMAERKRRQELTQKFIALSATIPGLKKTDKSSILGEAIDYVKQLQERVTELEQRNMRGKESMIILKKSEVCNSSETNSEDCCRASEMLPDVEARVMENEVLIEIHCEKEDGVELKILDHLENLQLCVTASSVLPFGNSTLGITIIAQMGDAYKMKAPTFTPFHFSSIDEKISCVVVDGGLVMNNPAVAVVTHVLHNKCDFPSVNGMEDLLVLSIGNRAQAKRMNNAGECSTSTVVDIALDGVFETTDQMLGNAFCWNRTDYVRIQDEEILHAVHRWEIVLVVEDVRDGSCCQIVHHQAIVDGGEVEGSEEARGRRRCEVRSSQQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03304 430 Gene3D - 101 173 IPR036638 GO:0046983
Gma13g03304 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Gma13g03304 430 MobiDBLite consensus disorder prediction 1 20 - -
Gma13g03304 430 Pfam Helix-loop-helix DNA-binding domain 106 151 IPR011598 GO:0046983
Gma13g03304 430 PANTHER BHLH TRANSCRIPTION FACTOR 1 261 - -
Gma13g03304 430 SUPERFAMILY FabD/lysophospholipase-like 264 377 IPR016035 -
Gma13g03304 430 SMART finulus 107 156 IPR011598 GO:0046983
Gma13g03304 430 Coils Coil 140 167 - -
Gma13g03304 430 MobiDBLite consensus disorder prediction 57 99 - -
Gma13g03304 430 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 261 - -
Gma13g03304 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 168 IPR036638 GO:0046983
Gma13g03304 430 MobiDBLite consensus disorder prediction 57 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03304 Gma-Chr13 46992662 46997680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03304 205 371 Acyl Lipid Metabolism Gene Families AT3G63200 48.066 2.34e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g03304 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03304 - - gmx:100809888 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03304 13 46992662 46997680 Gma07g00252 07 2182897 2186203 PCT
Gma07g00253 07 2195705 2198902 Gma13g03304 13 46992662 46997680 PCT
Gma08g01978 08 17775761 17778335 Gma13g03304 13 46992662 46997680 PCT