Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03303 ATGGGCGGCGACATCTCCTTCTTCAGTGAAGAGCATCCAAATCCAACCTTGTACTGTGTTGCAAATGAAACACATGTACAAACAGGAGCAAAGAGGGGTAGAAGCTCTTGGGAGACACCCACACGGGATCACATTATGTCCGAGAGAAAAAGGAGACAGCTAATGGCAGAGAGATTCATAGCGCTTTCAGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTGTACTGAGTGAAGCTATTAATTACGTGAAACAACTTAAAGGACGCATAGCTGTGCTGGAGCAAGAGAGTAGCAACAAGAAGTCGATGATGATCTTTACTAAGAAGTGCCTCCAATCTCATCCTCATTGTGAAAAAAACTCTAATCACGTGCTCCCTCAACTCCAAGTCGAAGCAATAGGTCTAGAGTTAGAGAGGGAAGTACTTATTAGAATCCTTTGTGAGAAACCAAAGGGCATCTTCCTCAAACTACTCACCTTACTTGAAAATATGCATCTTTCTATTGTCAGTAGCAACGTCCTGCCACTTGGAAAAAATACTCTCAACATCACCATTATTGCTCAGATGGGTGAGGAATACAACATGACGGGGGATGAATTGATGAGCAAACTGACGCAGGATCTTTTCAAGTTATATGAAGTGCCTCAGTGA 657 0.4292 MGGDISFFSEEHPNPTLYCVANETHVQTGAKRGRSSWETPTRDHIMSERKRRQLMAERFIALSAIIPGLKKIDKASVLSEAINYVKQLKGRIAVLEQESSNKKSMMIFTKKCLQSHPHCEKNSNHVLPQLQVEAIGLELEREVLIRILCEKPKGIFLKLLTLLENMHLSIVSSNVLPLGKNTLNITIIAQMGEEYNMTGDELMSKLTQDLFKLYEVPQ 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03303 218 SMART finulus 45 94 IPR011598 GO:0046983
Gma13g03303 218 Pfam Helix-loop-helix DNA-binding domain 44 89 IPR011598 GO:0046983
Gma13g03303 218 PANTHER BHLH TRANSCRIPTION FACTOR 2 216 - -
Gma13g03303 218 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 216 - -
Gma13g03303 218 Coils Coil 78 98 - -
Gma13g03303 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 106 IPR036638 GO:0046983
Gma13g03303 218 Gene3D - 38 111 IPR036638 GO:0046983
Gma13g03303 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03303 Gma-Chr13 46984703 46987324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03303 29 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.560 1.70e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g03303 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03303 - - gmx:100809351 426.017