Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03302 ATGGAGGAGAATCCGTGGGGAAGTTGGTCTTCCAATATGGAAATGGATGACGAGGATGTGAATGAAAGTTTGCGCGAGACGAACCAGTTTGATGAAGAGTTCCTAAGAGATATTCTGCAGCAGCCAGAAGAGGGCAGTGAAGATCTGAAAAACTCATCGATCATGTCGTCTCTATTTCCAACAACTTATATACTGTCCTTCGACAAATCCGCTGCTGAATTGTTACCAACTGAAACTGATCATCGTGATTATTCTTCTTCCCAATTGCCCTCATCATCAAATTCAAGGGCCAACCATGGAACCAACAAGAAGCCTCGAAGCGCTTCGGAGTCACTGGATCACATCATGTCAGAGAGAAATAGGAGACAGGAGCTCACCAGCAAATTCATTGCACTTGCTGCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCGCATGTACTGAGAGAAGCTATCAATTACGTGAAACAACTACAAGAACGTATAGAAGAGCTAGAAGAAGATATCCGAAAGAACGGTGTAGAATCAGCGATAACCATAATAAGATCTCATCTCTGCATTGATGATGACTCGAACACTGACGAAGAATGCTATGGGCCCAATGAAGCACTTCCTGAAGTTGAAGCAAGAGTCTTAGGAAAGGAAGTGTTAATCAAAATTTACTGTGGTAAACAAAAGGGAATTCTGCTTAAAATAATGTCTCAGCTCGAACGTCTTCATCTCTACATATCCACTAGCAATGTCTTGCCCTTTGGGAATACCCTTGACATCACCATTACTGCTCAGATGGGTGACAAATACAACTTGGTAGTGAACGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCATGTGATGTGCAACAATGA 876 0.4269 MEENPWGSWSSNMEMDDEDVNESLRETNQFDEEFLRDILQQPEEGSEDLKNSSIMSSLFPTTYILSFDKSAAELLPTETDHRDYSSSQLPSSSNSRANHGTNKKPRSASESLDHIMSERNRRQELTSKFIALAATIPGLKKMDKAHVLREAINYVKQLQERIEELEEDIRKNGVESAITIIRSHLCIDDDSNTDEECYGPNEALPEVEARVLGKEVLIKIYCGKQKGILLKIMSQLERLHLYISTSNVLPFGNTLDITITAQMGDKYNLVVNDLVKELRQVAMMKSCDVQQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03302 291 MobiDBLite consensus disorder prediction 81 105 - -
Gma13g03302 291 MobiDBLite consensus disorder prediction 1 24 - -
Gma13g03302 291 SMART finulus 115 164 IPR011598 GO:0046983
Gma13g03302 291 PANTHER BHLH TRANSCRIPTION FACTOR 18 289 - -
Gma13g03302 291 Pfam Helix-loop-helix DNA-binding domain 114 159 IPR011598 GO:0046983
Gma13g03302 291 Coils Coil 148 175 - -
Gma13g03302 291 Gene3D - 89 173 IPR036638 GO:0046983
Gma13g03302 291 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 18 289 - -
Gma13g03302 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 175 IPR036638 GO:0046983
Gma13g03302 291 MobiDBLite consensus disorder prediction 79 112 - -
Gma13g03302 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03302 Gma-Chr13 46971480 46975791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03302 106 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.191 2.12e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g03302 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03302 - - gmx:100795184 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03302 13 46971480 46975791 Gma07g00253 07 2195705 2198902 PCT
Gma13g03302 13 46971480 46975791 Gma08g01978 08 17775761 17778335 PCT
Gma07g00255 07 2209865 2214950 Gma13g03302 13 46971480 46975791 PCT
Gma08g01977 08 17758405 17764053 Gma13g03302 13 46971480 46975791 PCT