Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03279 ATGGCTTTTTGCCCAATTTTTTGTTGCGGAAATGGTTCGGATCGCAAAGGACGAGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACACTCCGCTACTAATAATTTCAACTATGATAACAAACTTGGCGAAGGGGGATTCGGCAGTGTGTACTGGGGCCAGCTCTGGGATGGATCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATGTTGGCTAGAGTACGACACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATTGTGTACGATTATATGCCAAATTTGAGCCTGCTCTCTCATCTTCATGGACAGCACTCAGCAGAATCCCTTCTTGATTGGAACCGGCGGATGAATATCGCAATTGGGTCTGCTGAGGGAATTGCAtatcttcaccaccagtcaacgccacacatcatccacagagatatcaaggcaagcaacgtgttgttggattcggattttcaggcacgggttgctgattttggttttgccaagttgatccctgatggggcaacacatgtgactacaagagttaagggcaccctaggctaccttgcaccagaatatgctatgttaggtaaagcaaatgagagttgtgatgtctacagtttcggaattctccttctagaacttgctagtggcaaaaaaccacttgagaaacttagttctgcagtgaagcgatcaataaatgattgggcgctgccattggcttgtgagaagaaattcagtgaactggcagatccaaaacttgagggtaactatgcggaggaagagcttaaaagagtggttttaattgctcttttatgtgctcaGAGTCAGGCAGAGAAGAGACCCACCATACTCGAGGTAGTAGAGCTACTAAAGGGAGAATCCAAAGATAAGTTGGCTCAGTTGGAAAATAATGAACTCTTTCAGAACCCTCCAGCTGTAGGACATACTGATGATGGGACCGTTGCTGCTGAAGGCAGTTCAGATTTCATCTCAGAAGAGAAGGAATCAAAACATGAGTTGGAAGAGAATACTGAGCCATAA 1104 0.2745 MAFCPIFCCGNGSDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEMLARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWNRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSAVKRSINDWALPLACEKKFSELADPKLEGNYAEEELKRVVLIALLCAQSQAEKRPTILEVVELLKGESKDKLAQLENNELFQNPPAVGHTDDGTVAAEGSSDFISEEKESKHELEENTEP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03279 367 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03279 367 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Gma13g03279 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Gma13g03279 367 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Gma13g03279 367 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03279 367 PANTHER BNAA05G14800D PROTEIN 1 364 - -
Gma13g03279 367 MobiDBLite consensus disorder prediction 326 367 - -
Gma13g03279 367 MobiDBLite consensus disorder prediction 349 367 - -
Gma13g03279 367 Coils Coil 305 325 - -
Gma13g03279 367 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Gma13g03279 367 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03279 367 PANTHER OS01G0750732 PROTEIN 1 364 - -
Gma13g03279 367 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Gma13g03279 367 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03279 Gma-Chr13 46756237 46759243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03279 28 314 Trihelix Transcription Factor Family AT1G70460 50.515 4.11e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gma13g03279 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03279 - - gmx:100788153 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03279 13 46756237 46759243 Gma13g03279 13 46756237 46759243 ECH
Gma13g03279 13 46756237 46759243 Gma15g00072 15 606823 609230 GST
Gma13g03279 13 46756237 46759243 Gma07g00276 07 2405946 2415824 PCT
Gma13g03279 13 46756237 46759243 Gma08g01954 08 17509024 17512376 PCT
Gma07g00276 07 2405946 2415824 Gma13g03279 13 46756237 46759243 PCT
Gma08g01954 08 17509024 17512376 Gma13g03279 13 46756237 46759243 PCT