Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03234 ATGAGGTATGATGTGTACCAAGGTCCTGATGCTGAGTTGGCGGAAATGCTAGAAAGGGATGGATGTGGAATAAGGAGACCCTGGAAAGGTGTTATCGTGTTCGGACCTCCAGGAACTGGGAAGACGCTTCTTGCTAAAGGAGTTGCTACTGAATGTGAGAGCGAGCGCATGGTTCGGTGCTTGTTTGATCTTGCAAGAGCATATGCCCCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTCAAGTCTGAACTTCTAGTTCAGGTGGCCCCTGATGTGAACATAGATGAAGTGGCTCGACGGACAGAGGGGTATAGTGGAGATGACTTGACAGATGTATGCCGTGATGCTTCCATGAATGGTATGAGGCGTAAGAAAGTCCAACCAAGTGTTTCTCTGGCTGACATTGAACGCCATGAGAAGTGGTTTGCCGAATTTGGATCAGCATAA 498 0.4759 MRYDVYQGPDAELAEMLERDGCGIRRPWKGVIVFGPPGTGKTLLAKGVATECESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVAPDVNIDEVARRTEGYSGDDLTDVCRDASMNGMRRKKVQPSVSLADIERHEKWFAEFGSA 165
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03234 165 CDD AAA 25 81 - -
Gma13g03234 165 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 141 165 - -
Gma13g03234 165 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 103 141 - -
Gma13g03234 165 Gene3D - 23 53 IPR027417 -
Gma13g03234 165 Gene3D - 54 101 IPR027417 -
Gma13g03234 165 SMART AAA_5 27 133 IPR003593 -
Gma13g03234 165 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 23 105 - -
Gma13g03234 165 Pfam AAA+ lid domain 108 153 IPR041569 -
Gma13g03234 165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 154 IPR027417 -
Gma13g03234 165 PANTHER AAA DOMAIN-CONTAINING 23 105 - -
Gma13g03234 165 Pfam ATPase family associated with various cellular activities (AAA) 53 106 IPR003959 GO:0005524|GO:0016887
Gma13g03234 165 Gene3D - 102 160 - -
Gma13g03234 165 PANTHER AAA DOMAIN-CONTAINING 141 165 - -
Gma13g03234 165 PANTHER AAA DOMAIN-CONTAINING 103 141 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma13g03234 Gma-Chr13 46411832 46413681 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03234 26 105 Calmodulin-binding Proteins AT3G56690 46.465 1.56e-17 77.0
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03234 13 46411832 46413681 Gma15g00121 15 991961 995309 GST
Gma13g03234 13 46411832 46413681 Gma07g00319 07 2708291 2712312 PCT
Gma13g03234 13 46411832 46413681 Gma08g01905 08 17155805 17159947 PCT
Gma07g00319 07 2708291 2712312 Gma13g03234 13 46411832 46413681 PCT
Gma08g01905 08 17155805 17159947 Gma13g03234 13 46411832 46413681 PCT