Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03230 ATGGAGAAAGAAGCTGTTGGCCTTGAAATCACTACTGAGCTAAGGTTGGGCCTTCCCGGTGGGGAATTACCTGACAAGAACGAGAAGATAAAGAAGAGGGTGTTCTCCGAGATTCAAGCTCATGATGATGATGAAAACAGTTCCTCCGAACAAGACCGCAAAATCCAAACCAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGTTCGTACCGCAAGAAGAACACCGTCAATGAAACCAAAATGTACGTCAAAGTTAGCATGGACGGGGCTCCTTTCTTGCGTAAAATTGATTTAGCTATGCACAAGGGATATTCGGAGCTGGTCTTGGCCTTGGAGAAGTTCTTCGGTTGCTATGGAATTCGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAAGGATTTATAGAAGGCGTAACAAAATGA 570 0.4596 MEKEAVGLEITTELRLGLPGGELPDKNEKIKKRVFSEIQAHDDDENSSSEQDRKIQTKNQVVGWPPVCSYRKKNTVNETKMYVKVSMDGAPFLRKIDLAMHKGYSELVLALEKFFGCYGIREALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03230 189 SUPERFAMILY CAD & PB1 domains 74 165 - -
Gma13g03230 189 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
Gma13g03230 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 173 IPR003311 GO:0005634|GO:0006355
Gma13g03230 189 Gene3D - 74 177 - -
Gma13g03230 189 Pfam AUX/IAA family 31 172 IPR033389 -
Gma13g03230 189 PANTHER AUXIN-RESPONSIVE PROTEIN 6 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03230 Gma-Chr13 46377503 46380731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03230 77 187 B3 DNA Binding Superfamily AT4G23980 35.135 2.32e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma13g03230 AUX_IAA 2.9e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03230 K14484 - gmx:100305535 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03230 13 46377503 46380731 Gma13g03230 13 46377503 46380731 ECH
Gma13g03230 13 46377503 46380731 Gma15g00125 15 1028229 1031442 GST
Gma07g00321 07 2740780 2744540 Gma13g03230 13 46377503 46380731 PCT
Gma08g01903 08 17114767 17118209 Gma13g03230 13 46377503 46380731 PCT