Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03229 ATGGATGTTACTTCCCTGGGTTCAAATAGCAATACCCAAACCGACCAACACCCTCTGTTGATGGAGCAGCCGGAAACCCGTAATGGACACCAGCATGTAATTGACATTACAAGGAATGGTGAAGCTCTAACAACATCATATCGTAATGATCAACACTCTGAAATGCATTTAACACAGAATCAAGATCAACCAGCTGGGGATGCACAAGATTCCAGTCATCAAACAACTTCATCTTCTGCCCCCAGATTAAACTCTAGAAATTCAGCTTCATTGAGAAGAGGTGATGGATATGGTCATCGTGGAAGGAGTCCATTGAATTCTGGACTGTGGATCTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATAGTCGTTTTGTCATTGTCCAGGAATGAAAATCCCCAGGCCCCATTATTTGCATGGATTGTGGGCTATGGGTCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATACCTCTCAAGCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTTCTTATACTTCCATCTATGTTTCTCATGTCTCAGATGAGGAGAATGGTCACGCTACACAATCAGCCTCAAGAAACACTATAATGCCTGGAGCATTTACTTCTAGGCTTAACGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTACAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTGCCTTGTATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCAATTAATGCTCTACCAATCTTTAAGTTCAAATTGAAGAACAATGAAAATGGTGATGACCAGGATGCCAATTCAGCTATAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCACGTCGAATGTGTTGACAAATGGTTAAAGATAAATGCAACCTGCCCTCTCTGTAAAAATGAAGTTGGTACGAGTAATGGAGGGTCCCCTTCAGCCTGA 1260 0.4175 MDVTSLGSNSNTQTDQHPLLMEQPETRNGHQHVIDITRNGEALTTSYRNDQHSEMHLTQNQDQPAGDAQDSSHQTTSSSAPRLNSRNSASLRRGDGYGHRGRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYGSGCVATLPILYWRFRNRNQSNEQDTSQASQGSSGSNPPDRSYTSIYVSHVSDEENGHATQSASRNTIMPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDANSAIDEGGILAAGTEKERMISGEDAVCCICLAKYADDDELRELPCSHVFHVECVDKWLKINATCPLCKNEVGTSNGGSPSA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03229 419 SMART ring_2 365 405 IPR001841 -
Gma13g03229 419 CDD RING-H2_RNF111_like 364 406 - -
Gma13g03229 419 MobiDBLite consensus disorder prediction 53 103 - -
Gma13g03229 419 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Gma13g03229 419 SUPERFAMILY RING/U-box 357 412 - -
Gma13g03229 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Gma13g03229 419 PANTHER PROTEIN, PUTATIVE-RELATED 1 418 - -
Gma13g03229 419 Pfam Ring finger domain 365 406 IPR001841 -
Gma13g03229 419 SMART ringv_2 364 406 IPR011016 GO:0008270
Gma13g03229 419 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 418 - -
Gma13g03229 419 MobiDBLite consensus disorder prediction 53 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03229 Gma-Chr13 46363743 46368461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03229 1 416 C3H Transcription Factor Family AT1G80400 57.820 2.67e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03229 - - gmx:100819516 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03229 13 46363743 46368461 Gma13g03229 13 46363743 46368461 ECH
Gma13g03229 13 46363743 46368461 Gma15g00126 15 1047172 1051866 GST