Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03217 ATGGATGGCATTGAGGATGATGCAAGGTATCCCCCTAACCCATATGGTTATGGTTATCAGAATTCTCTATATTCCCCCCCAGTTGATACTGAATATGCCCTAGATGATAATGATGAAAATGAAGAGCATGTGCAGTTAGAAGGGGAAGATGAGGTTGATGTTGATCAAAGTAACAACCTTCAGCTTCCCCAAAAGGATGATGATGAAGAAGATGGCATGGATGGGGGTGGTGATGAAAATGATGATGATGAGGAGGAGGAGGCGGAAGAGAATAAGCAGATTGATTATTATCCCACTAAGAGTGATGAAGATGAGGTAGAATGGCACCCAAAAAAGCAAAAGCTCAAGAGTTTGATTTCGACCTATGAACTTGCGCCTAGAGTGCCAGCACCATCAGTTGCAGCTACAGCTCCCTCAGTTCCTAAACCATCTTCTGGTGGTAGGAATTCACTAACTGACTGGACTGAGCGAGAGACGTTTGTTCTTCTTGATGCATGGGGTGATAGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAACAAATTGCAAAAATGGTATCACAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGTAGAAATCGTCTGGATACATTGAAGAAAAAATACAAGAAAGAGAAGGCTAAATTTCCAGATAGTGATGGTGGAGCTTGCAAATGGGTTTATTTTAAAAGTATGGATGAGCTAATGGCTTCTCCTCCGCAACAAGCTGGTCTCTCTTGTGGTGTAGACTCAGGAGAGTATGTTTTTATGAACCCCAGAGTTCATTTGAACCATGCAAATGGGTTGGATGAAATGAGGGATAGTCCTGACAATACAGAATCTACTGGTGAAGAAGGTTCTGATGGACCTCAAGCAAAGAAAAGAAAGAAGAGAAGGGGCAGTGGTGAAGCTTCTTCCTTCAGGTTACTTGCTGATTCCATTCAGAAATTCAGTAAGATATATGAGAAGATAGAAAATAGTAAAAGGCAGCAGATGGTGGAACTGGAAAAAATGAGGATGGATTTCCATAAAGAGTTGGAAACACAGAAGAGGCAGATTTTAGAGAATCTGCGGTGTGAGATTTCAAAACTAGAGCAGAGAAATGATGACAACGATGATTCTGCTGAGAATGGTACCTGA 1155 0.4147 MDGIEDDARYPPNPYGYGYQNSLYSPPVDTEYALDDNDENEEHVQLEGEDEVDVDQSNNLQLPQKDDDEEDGMDGGGDENDDDEEEEAEENKQIDYYPTKSDEDEVEWHPKKQKLKSLISTYELAPRVPAPSVAATAPSVPKPSSGGRNSLTDWTERETFVLLDAWGDRFLQHGRKSLRCEEWQQIAKMVSQVSKIERTDTQCRNRLDTLKKKYKKEKAKFPDSDGGACKWVYFKSMDELMASPPQQAGLSCGVDSGEYVFMNPRVHLNHANGLDEMRDSPDNTESTGEEGSDGPQAKKRKKRRGSGEASSFRLLADSIQKFSKIYEKIENSKRQQMVELEKMRMDFHKELETQKRQILENLRCEISKLEQRNDDNDDSAENGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03217 384 PANTHER OS01G0718900 PROTEIN 32 382 - -
Gma13g03217 384 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 32 382 IPR044823 -
Gma13g03217 384 MobiDBLite consensus disorder prediction 1 111 - -
Gma13g03217 384 MobiDBLite consensus disorder prediction 92 111 - -
Gma13g03217 384 MobiDBLite consensus disorder prediction 132 151 - -
Gma13g03217 384 MobiDBLite consensus disorder prediction 271 310 - -
Gma13g03217 384 MobiDBLite consensus disorder prediction 271 285 - -
Gma13g03217 384 MobiDBLite consensus disorder prediction 67 91 - -
Gma13g03217 384 Gene3D - 154 216 - -
Gma13g03217 384 Coils Coil 326 379 - -
Gma13g03217 384 CDD SANT 154 206 IPR001005 -
Gma13g03217 384 MobiDBLite consensus disorder prediction 32 54 - -
Gma13g03217 384 ProSiteProfiles Myb-like domain profile. 154 211 IPR001005 -
Gma13g03217 384 Pfam Myb/SANT-like DNA-binding domain 153 240 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03217 Gma-Chr13 46248183 46249997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03217 300 373 Trihelix Transcription Factor Family AT3G14180 44.595 6.08e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gma13g03217 Myb_DNA-bind_4 3.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03217 - - gmx:100814194 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03217 13 46248183 46249997 Gma13g03217 13 46248183 46249997 ECH
Gma13g03217 13 46248183 46249997 Gma15g00137 15 1163645 1164838 GST