Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03175 ATGACTCGGCGTTGCTCCCACTGCAGCAACAACGGCCACAATTCCCGGACATGCCCTTCGCGTGGGGGCGGAGGTGTGAAGCTTTTCGGGGTCAGGCTGACGGATGGATCAATCATTAAGAAGAGCGCCAGCATGGGCAACCTAAACCTCTCCTCCGCCGCCGCACATCACCAATTCCATTCATCTCCTTCTTCTTCCAACCTCGCCGCCGCCCCCTCATCCCCCAATCCAAGCTCCCCATGCTCCGACCCTCCCCAAGGTTACTTGTCCGATGACCCCGCCCATGTCTCCACCTTCGCTAACCGCCGCGGTGATAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGGCTGTTCTTAATTGGTCTCCAGAAGCTAGGCAAAGGAGACTGGCGTGGGATAGCACGCAATTTTGTTGTATcaaggacccctactcaagtagcaagtcatgcccagaagtattttATCCGGCAGAGTCATGCTACCAGGAGAAAGAGACGTTCCAGTCTTTTTGACATGGTTCCAGATATGTCTTCAGATCAACCTTCTGTGCCAGAAGAACAAGTGTTGCTTCCACCTTCCCAGAACTCACAACCTTGCAATGGAAAATCACAGCCTTCATTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAGACTACTTCTCAAGAAAATGCGCAACAGACCAATGAAACTATGATGGGATCAATCGGACTGACACCAATGGCTCCTCATGGATTCTTTCCTGCATATTTACCTGTTCCATTTCCCATGTGGCCATCAACTGTGGCTCCCCCGTTTGAAGAAGTTAAGGGAGGAGAGACATCCCACCATCAGATCCACAAGCCAATCCCAGTCATTCCCAAGGAACCTGTTAATGTTGACGAACTTGTGGGAATGTCTCATCTAAGCATTGGGGAAGCAAAGGTACGTGATAGAGAGCCTTCCCCTCTTTCCTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTACTTCGGATTTAAACAATGGCAAGGACAACGCAATTCAAGCTGTCTGA 1071 0.479 MTRRCSHCSNNGHNSRTCPSRGGGGVKLFGVRLTDGSIIKKSASMGNLNLSSAAAHHQFHSSPSSSNLAAAPSSPNPSSPCSDPPQGYLSDDPAHVSTFANRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMSSDQPSVPEEQVLLPPSQNSQPCNGKSQPSLNLSLKSEFEPMETTSQENAQQTNETMMGSIGLTPMAPHGFFPAYLPVPFPMWPSTVAPPFEEVKGGETSHHQIHKPIPVIPKEPVNVDELVGMSHLSIGEAKVRDREPSPLSLKLLGEPSRQSAFHANAPVGTSDLNNGKDNAIQAV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03175 356 MobiDBLite consensus disorder prediction 1 25 - -
Gma13g03175 356 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Gma13g03175 356 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Gma13g03175 356 CDD SANT 111 156 IPR001005 -
Gma13g03175 356 MobiDBLite consensus disorder prediction 58 76 - -
Gma13g03175 356 MobiDBLite consensus disorder prediction 174 209 - -
Gma13g03175 356 MobiDBLite consensus disorder prediction 333 356 - -
Gma13g03175 356 MobiDBLite consensus disorder prediction 58 93 - -
Gma13g03175 356 MobiDBLite consensus disorder prediction 1 18 - -
Gma13g03175 356 SMART sant 108 158 IPR001005 -
Gma13g03175 356 SUPERFAMILY Homeodomain-like 106 160 IPR009057 -
Gma13g03175 356 PANTHER TRANSCRIPTION FACTOR KUA1 1 350 - -
Gma13g03175 356 MobiDBLite consensus disorder prediction 335 356 - -
Gma13g03175 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Gma13g03175 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Gma13g03175 356 Gene3D - 110 161 - -
Gma13g03175 356 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Gma13g03175 356 PANTHER OS01G0187900 PROTEIN 1 350 - -
Gma13g03175 356 MobiDBLite consensus disorder prediction 182 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03175 Gma-Chr13 45884984 45888461 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma13g03175 Myb_DNA-binding 8.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03175 - - gmx:778036 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03175 13 45884984 45888461 Gma13g03175 13 45884984 45888461 ECH
Gma13g03175 13 45884984 45888461 Gma15g00190 15 1532216 1535485 GST