Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03172 ATGAATCTTATACAAAACCCCTCTTTAAGTTTGCTACTACACTTGTATTTCTTTCTGCTTTGTCTTCATTGCACAAGTTCTTATCCCACAGCCATGAACTGCACCGACACAAGTCGTGTTTGCACTTCTTTCTTGGCCTTTAAGCCTCATCAAAACCAAACCTTGGCTGTGATACAAAGCATGTTTGATGTGTTGCCCGGTGAGATCACCGTTGAAGGCAATGGCTGGGATTATATATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACACTCACTGTGAAATCCAATGGAGGATTTGAGCATGATTTGGTGATGGAAGCCTATGACAGGCTTGCTCTCTTGCCCAACACCACGACGCGTTGGGCAAGAGAAGGCGGTATCATATCTCTGAGCTTGTTCTGTAGTTGCTCTAGTGGACTGTGGAACTATCTGATGAGCTATGTCATCAGAGATGGGGACAGTGTTGAATCACTAGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATTGACAATCCTACTGTTGGTTCTCTCGTTTATATACCTTTGAATTCGGTTCCTGGTGAGTCTTACCACTTGATGAATGATACTCCTCCAGCTCCAACCCCTTCGCCGTCTGTTAATAATTTTTCAGCTGACCAAGTCAACCAGAAGGCTCATGTACCCCATGAATGGATCATAGGAGGTTTAGGGGTTGGTCTTGCTCTGATAATATTAACCATTATTGTGTGTGTGGCCCTAAGATCACCCAATTGTTTGGTTGAAGCCGGAAATAATGCAAAAGATTCTTCAGGAAAGATCTCTAATAAGTTCTATGTTTTTGGAAATCCAAGTTTGTTTTGTGGATGTGTCAAACCTGTGGACCAGAAGCAAACTGATGGTGAATCCAGCAGTCACCAAATTACCGGTACCAAAACATCAACTCTAATACCTGACATGTTGGACATGGATAAGCCTGTAGTTTTTTCATATGAAGAAATTTTTTCTTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCACAGAACATATGGCTCTGTTTACTATGGTCTCCTCGGTGACCAGGAAGTTGCTATTAAAAGAATGACATCTACTAAAACTAAAGAATTTATGTCAGAGGTAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGTTAGCCATGATGAGTTTTTCCTTATTTATGAATTTGCTCAGAAAGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCACCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATACATACACGAGCATACAAAAACTCGTTACGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTAGGTAAAACAAATGAGGGAGAAACCGCAGCAACCAAAGTTGTAAATGCATATGGATATCTTGCTCCAGAATACTTGAGCAATGGCCTTGCAACGACCaaaagtgatgtctatgcatttggtgttgttctttttgagattatatcagggaaggaagccattattcaaacacAAGGCCCTGAAAAACGATCATTGGCATCTATTATGTTGGCAGTTCTTAGGAACTCACCTGATACCGTGAGCATGTCAAGCACGAGAAACCTCGTTGATCCTATTATGATGGATATGTATCCCCATGATTGTGTATATAAGATGGCCATGCTGGCAAAGCAATGTGTGGATCAGGATCCTGTATTACGCCCTGATATGAAACAAGTTGTGATTTCCCTCTCACAAACCCTGTTGTCTTCTGTTGAGTGGGAAGCCACTCTTGCTGGGAACAGCCAGTTGAAACTGGTGAAACATTGGTACAAGGCTAAGGCTTACTTGACAAGGTGGATCAAAAGATCTTCTGGAATAAAGGACGGCCCAATTATCAATCAAGAGAACGTCCCCTTTTTGCCAAGGAATGGCAACAGATTCTTCCTCCAGAATGTGGAGACAATCATAGACAATGTGAGAGGGGTACTTCTCCTTCATCCTTTGATACACCACGCGGCTAAGAACAATGATTCAAGGAAAGCTTTTTGGGTTTTGACGGAGTCCCTGAGAGGAACCGAACTTGCAGTTGCAGGTGGAGGAGACACCACAGCGGGGAATGGAACTCCGTTCACAAGCTTCTGCCCGGGAACTTGGATTTCCACCAATGAACTTCCCATGTTTTCTCCCACAGTCACCCGCCACGGAGGAAAGGATAACTTTAGAGACGGAAACTCTGAATGCGACCAGTGTCATATGGGCTATCCTATGGCCCATTTAGCGCACTCACAACCCATGGGCTCATGCTAG 2433 0.4205 MNLIQNPSLSLLLHLYFFLLCLHCTSSYPTAMNCTDTSRVCTSFLAFKPHQNQTLAVIQSMFDVLPGEITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGFEHDLVMEAYDRLALLPNTTTRWAREGGIISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNGIDNPTVGSLVYIPLNSVPGESYHLMNDTPPAPTPSPSVNNFSADQVNQKAHVPHEWIIGGLGVGLALIILTIIVCVALRSPNCLVEAGNNAKDSSGKISNKFYVFGNPSLFCGCVKPVDQKQTDGESSSHQITGTKTSTLIPDMLDMDKPVVFSYEEIFSSTDGFSDSNLLGHRTYGSVYYGLLGDQEVAIKRMTSTKTKEFMSEVKVLCKVHHANLVELIGYAVSHDEFFLIYEFAQKGSLSSHLHDPQSKGHSPLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETAATKVVNAYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKEAIIQTQGPEKRSLASIMLAVLRNSPDTVSMSSTRNLVDPIMMDMYPHDCVYKMAMLAKQCVDQDPVLRPDMKQVVISLSQTLLSSVEWEATLAGNSQLKLVKHWYKAKAYLTRWIKRSSGIKDGPIINQENVPFLPRNGNRFFLQNVETIIDNVRGVLLLHPLIHHAAKNNDSRKAFWVLTESLRGTELAVAGGGDTTAGNGTPFTSFCPGTWISTNELPMFSPTVTRHGGKDNFRDGNSECDQCHMGYPMAHLAHSQPMGSC 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03172 810 SMART serkin_6 348 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03172 810 ProSiteProfiles LysM domain profile. 154 207 IPR018392 -
Gma13g03172 810 ProSiteProfiles Protein kinase domain profile. 348 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03172 810 SUPERFAMILY Protein kinase-like (PK-like) 323 625 IPR011009 -
Gma13g03172 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Gma13g03172 810 CDD LysM 155 187 IPR018392 -
Gma13g03172 810 SMART LysM_2 155 196 IPR018392 -
Gma13g03172 810 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 645 IPR044812 GO:0019199|GO:0045087
Gma13g03172 810 Gene3D Phosphorylase Kinase; domain 1 323 419 - -
Gma13g03172 810 Gene3D LysM domain 153 202 IPR036779 -
Gma13g03172 810 PANTHER BNAA06G02020D PROTEIN 32 645 - -
Gma13g03172 810 Pfam LysM domain 156 188 IPR018392 -
Gma13g03172 810 SUPERFAMILY LysM domain 154 196 IPR036779 -
Gma13g03172 810 Gene3D Transferase(Phosphotransferase) domain 1 421 640 - -
Gma13g03172 810 Pfam Protein tyrosine and serine/threonine kinase 353 623 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03172 Gma-Chr13 45847306 45853398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03172 32 645 Receptor kinase-like Gene Family AT1G51940 62.362 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gma13g03172 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03172 - - gmx:100781752 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03172 13 45847306 45853398 Gma13g03172 13 45847306 45853398 ECH
Gma13g03172 13 45847306 45853398 Gma15g00194 15 1570251 1575530 GST
Gma13g03172 13 45847306 45853398 Gma07g00145 07 1236000 1242184 PCT
Gma13g03172 13 45847306 45853398 Gma08g01842 08 16537315 16544168 PCT
Gma07g00145 07 1236000 1242184 Gma13g03172 13 45847306 45853398 PCT
Gma08g01842 08 16537315 16544168 Gma13g03172 13 45847306 45853398 PCT