Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03168 ATGAATGAAAGGTCAAGAGACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAGTCCTCAGAAGAAAGAAAACTCGAACTCAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGTGGTAAAATGAAGAACAACAACACAGAAAGAGAAGATCAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACATTAACAGTAATGCGTTCCAAAGCAAGGCCTCTCATCCATGGCCAAACTACCACCACCATGGCCAGGGTAACAACAAAAAAGCCTCTTCTTCATCATTTCTTCAGTTCCCATCATCAACCCAACCTGTGATGATGGGAAAAGATGCTTCTTGCCCTAAGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAGAACCTTTCAAGCAGCAGCAGTGCTTCTAAGCCACCACCACCTCCTGAGTCTCAGGCTGAGCAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGA 1041 0.4611 MNERSRDEASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPGEDWSLGGKMKNNNTEREDQSLLSLGCFSPNINSNAFQSKASHPWPNYHHHGQGNNKKASSSSFLQFPSSTQPVMMGKDASCPKVVVELQQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLSSSSSASKPPPPPESQAEQQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEFTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSAMK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03168 346 MobiDBLite consensus disorder prediction 21 44 - -
Gma13g03168 346 Pfam AUX/IAA family 39 329 IPR033389 -
Gma13g03168 346 MobiDBLite consensus disorder prediction 99 122 - -
Gma13g03168 346 ProSiteProfiles PB1 domain profile. 220 324 IPR000270 GO:0005515
Gma13g03168 346 SUPERFAMILY CAD & PB1 domains 216 321 - -
Gma13g03168 346 MobiDBLite consensus disorder prediction 1 64 - -
Gma13g03168 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 337 IPR003311 GO:0005634|GO:0006355
Gma13g03168 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 337 - -
Gma13g03168 346 MobiDBLite consensus disorder prediction 84 123 - -
Gma13g03168 346 MobiDBLite consensus disorder prediction 142 165 - -
Gma13g03168 346 MobiDBLite consensus disorder prediction 142 213 - -
Gma13g03168 346 Gene3D - 214 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03168 Gma-Chr13 45808994 45811705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03168 224 335 B3 DNA Binding Superfamily AT4G23980 33.929 1.18e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma13g03168 AUX_IAA 9.4e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03168 K14484 - gmx:100799244 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03168 13 45808994 45811705 Gma15g00198 15 1602234 1605496 ECH
Gma13g03168 13 45808994 45811705 Gma13g03168 13 45808994 45811705 ECH
Gma13g03168 13 45808994 45811705 Gma15g00198 15 1602234 1605496 GST
Gma13g03168 13 45808994 45811705 Gma07g00144 07 1223272 1226557 PCT
Gma13g03168 13 45808994 45811705 Gma08g01841 08 16523281 16525931 PCT
Gma07g00144 07 1223272 1226557 Gma13g03168 13 45808994 45811705 PCT
Gma08g01841 08 16523281 16525931 Gma13g03168 13 45808994 45811705 PCT