Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03161 atgggcatcaaatcacattacattttgacatcgtcggtgcgtaaatcctggcaaggagatccttgtgcaccatcaaaatactcttggaatggactcaaccgtagcaataatggatataattcacccacaataattgcattggatttatcgaacaatatcttaacaggacctctgcctgatttttcacaactgcaacacttaaaggctctcaatttgtcagggaacagactctcagatgaaattccttcacttctcacagaaagatcaaataatggttcactttcattgaggtttTGTGTAGGAAATCCGTATCTATGCCGGGTGAGCCCATGTGAAGAGGACAAAAAGAATATTGCCCTACTTGTTGCAGGCATTCTTTCAGCAGTAGTCTTTTTCATTGCATTGGGTATTGTACTGAATATCATTTGGAGAAGGAGATGCAACAGAAAACCAGCATTAAAGCAAGCTGTGAGATCAAATGAAGAGATTGTGCTGAAGACAAACAATACACAGTACACATACTCTCAGATATTGACTattactgataacttcgacaaaatgattgggaagggaggatgtggaattgtttatcttggttccttacaggatggcacacaagttgctgtcaaaatgctcttgccaaaatgtcctcaaggatctcagcaaaatgttctagctaaaatacattccacgtatgtgcaggctcaactcttaatgcgtgtgcatcacaaaaacttagcttcgtttctcggatactgtaatgaagttggacacacaggcatcatctatgaatacatggcttatgggaacttggaagagtatctttcagTAGATGCAAGGAGAGAACCGTTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGGTATCgaCACAGAAGCACTTCTTGTGCTTTTTGCATTTGTCTTCTTGGCATGGGGCAATGCACAAAATACCCTTGTGCCAGCAATCATAACATTTGGTGACTCGGCTGTGGATGTTGGGAACAATGATTATCTGCCTACCCTTTTCAAGGCTAACTACCCTCCTTATGGAAGGGACTTTATCAACCATCAACCCACTGGGAGGTTCTGCAATGGGAAACTAGCTACTGATATTACTGCTGAAACACTGGGTTTTAAGAGTTATGCACCTGCGTACCTTAGCCCTCAGGCATCAGGGAAGAATCTTCTTATTGGAGCAAACTTTGCTTCAGCTGCCTCTGGTTATGATGAAAAGGCTGCTATTCTGAATCATGCGATTCCATTGTCCCAACAGTTAAAATATTACAAGGAATACCGAGGCAAGCTGGCCAAGGTAGTTGGCAGTAAAAAAGCAGCATTGATTATTAAGAATGCACTCTACATATTGAGTGCTGGCAGCAGTGACTTTGTGCAAAACTATTACGTCAATCCTTTGATCAACAAAGCCTTCACTCCTGATCAGTACTCTGCATACCTTGTTGGTTCATTTTCAAGCTTTGTTAAGGACTTGTATAAATTGGGAGCCAGGAAAGTTGGAGTGACTTCACTCCCACCTCTGGGTTGCCTACCTGCTGCAAGAACTTTATTTAGTTTCCATGAGAAAGGTTGTGTCTCGAGGATCAACAATGACACCCAAGGATTTAACAAGAAAATCAAGTCAGCTGCAGCAAATCTCCAAAAGCAACTTCCTGGTCTTAAGATTGTAGTCTTTGATATTTTCAAACCTCTCTATGACCTTGTTCAGTCCCCTTCAAAATTTGGTTTTGCGGAGGCAAGGAAAGGTTGCTGTGGTACTGGGATAGTGGAGACAACATCTTTATTGTGCAATCCAAAATCACTAGGAACTTGCTCTAATGCAACCCAATATGTGTTTTGGGACAGTGTCCATCCTTCACAAGCTGCTAACCAAGTTTTAGCCGATGCTTTGATTGTACAAGGCATAGCCCTTATCACTTAA 1950 0.2954 MGIKSHYILTSSVRKSWQGDPCAPSKYSWNGLNRSNNGYNSPTIIALDLSNNILTGPLPDFSQLQHLKALNLSGNRLSDEIPSLLTERSNNGSLSLRFCVGNPYLCRVSPCEEDKKNIALLVAGILSAVVFFIALGIVLNIIWRRRCNRKPALKQAVRSNEEIVLKTNNTQYTYSQILTITDNFDKMIGKGGCGIVYLGSLQDGTQVAVKMLLPKCPQGSQQNVLAKIHSTYVQAQLLMRVHHKNLASFLGYCNEVGHTGIIYEYMAYGNLEEYLSVDARREPLSWRQRIQIAVDAAQGIDTEALLVLFAFVFLAWGNAQNTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFINHQPTGRFCNGKLATDITAETLGFKSYAPAYLSPQASGKNLLIGANFASAASGYDEKAAILNHAIPLSQQLKYYKEYRGKLAKVVGSKKAALIIKNALYILSAGSSDFVQNYYVNPLINKAFTPDQYSAYLVGSFSSFVKDLYKLGARKVGVTSLPPLGCLPAARTLFSFHEKGCVSRINNDTQGFNKKIKSAAANLQKQLPGLKIVVFDIFKPLYDLVQSPSKFGFAEARKGCCGTGIVETTSLLCNPKSLGTCSNATQYVFWDSVHPSQAANQVLADALIVQGIALIT 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03161 649 ProSiteProfiles Leucine-rich repeat profile. 66 88 IPR001611 GO:0005515
Gma13g03161 649 Pfam GDSL-like Lipase/Acylhydrolase 327 639 IPR001087 GO:0016788
Gma13g03161 649 Pfam Protein tyrosine and serine/threonine kinase 184 300 IPR001245 GO:0004672|GO:0006468
Gma13g03161 649 SUPERFAMILY L domain-like 28 109 - -
Gma13g03161 649 PANTHER GDSL ESTERASE/LIPASE EXL3 302 648 - -
Gma13g03161 649 SUPERFAMILY Protein kinase-like (PK-like) 162 301 IPR011009 -
Gma13g03161 649 Gene3D SGNH hydrolase 317 644 IPR036514 -
Gma13g03161 649 ProSiteProfiles Protein kinase domain profile. 182 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g03161 649 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 302 648 - -
Gma13g03161 649 Gene3D Ribonuclease Inhibitor 1 101 IPR032675 -
Gma13g03161 649 SUPERFAMILY SGNH hydrolase 327 640 - -
Gma13g03161 649 CDD SGNH_plant_lipase_like 325 641 IPR035669 -
Gma13g03161 649 Gene3D Transferase(Phosphotransferase) domain 1 164 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03161 Gma-Chr13 45751195 45756172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03161 305 643 Pollen Coat Proteome AT1G75930 36.735 6.63e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gma13g03161 Lipase_GDSL 7.3e-37 CL0264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03161 - - gmx:100795716 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03161 13 45751195 45756172 Gma13g03161 13 45751195 45756172 ECH
Gma13g03161 13 45751195 45756172 Gma15g00205 15 1663826 1665187 GST
Gma13g03161 13 45751195 45756172 Gma07g00135 07 1131008 1134049 PCT
Gma13g03161 13 45751195 45756172 Gma08g01830 08 16414493 16416910 PCT
Gma07g00135 07 1131008 1134049 Gma13g03161 13 45751195 45756172 PCT
Gma08g01830 08 16414493 16416910 Gma13g03161 13 45751195 45756172 PCT