Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03159 ATGGCATCTGAAGAAAGCACAGTTAATGCAACTACCAGATTGTACGAAACTGGTGCATCTTCTTCTGTTCAGTTACTGACTCAAGCAAGGATTCTTCTCATCCTGCTGGCTCTTGGTTTCACTTCATCAGTGACTGTTATGGATGGTCTAAGTTGGGATGCCTCATCAGTACAACTTGTTGCTAACACACCGATCTTGTGGAGCACTCAGCCTCAAGACCTTGAAGGAGGCTATCTTCATTCCATGCCCCACCTATGTTCAAGTGCTCTCAATCAAACAGGCTACCCATATCCATGTTCTGAAAAAGTGAGGGGCATGGTTCACTCATCCACTACTTGTGAGATGATGAGTATGATGCCAAACACAAATCTGCCACAAAGAATTACAGCAACCATGCCTGTGAAATCAGTAGTAGCAGCTGGAGCCAGTTGGGAAGAAACTTTAACATCCCAATCACGCCCGTCCCTTTCAGCGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCAACACCTTATCAATGGCACACAAAATGGCAAGGCTACTACCTGCTCTCTTGATCAGTCACTTGATTGCTTGCTTTCAGCTACTAATAATAGCAACACAGACATGTCTGTCCAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACCTATGGAATAACTTCAGTTATGGCAGTGTAGCTAATTCCTCTGGTGAATCTGAGAGCAATGCTTCCATTAATGCTAGAAACAGTGACATGAGGTATCCCTCAGTCAGTGAACTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGGAAGAGTAATAGATTCATCTGAAGTTATTTGCACAAAAAGGAGCAGTAGTTCGGGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAATTAGGTGGTTTCACGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGATCATAAGTATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGACACCTTCCTTTGAAGAACCTGATCCAGAAGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTGGAAGCAGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCTTCTGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGAGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTAGAAAATCTTGGTAACAAGCTTGACACAATGAATTGTCCTCCTACTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATACTCCAAGGGTTGA 1491 0.4339 MASEESTVNATTRLYETGASSSVQLLTQARILLILLALGFTSSVTVMDGLSWDASSVQLVANTPILWSTQPQDLEGGYLHSMPHLCSSALNQTGYPYPCSEKVRGMVHSSTTCEMMSMMPNTNLPQRITATMPVKSVVAAGASWEETLTSQSRPSLSANMNQTSNYVADFNMAHQQQHQHLINGTQNGKATTCSLDQSLDCLLSATNNSNTDMSVQDDGISMILSDCRNLWNNFSYGSVANSSGESESNASINARNSDMRYPSVSELDESVSQSFSDQYLSQGRVIDSSEVICTKRSSSSGFSIAQNSSATELGGFTLISETSPKSKRPRWDHKYPGSSNINFQQPNSSVTPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIAFSFNPSFPIQTHFPIQNPSSHIQYSKG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03159 496 MobiDBLite consensus disorder prediction 337 354 - -
Gma13g03159 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 395 444 IPR011598 GO:0046983
Gma13g03159 496 PANTHER TRANSCRIPTION FACTOR BHLH87 47 493 - -
Gma13g03159 496 Coils Coil 434 454 - -
Gma13g03159 496 MobiDBLite consensus disorder prediction 321 356 - -
Gma13g03159 496 Gene3D - 400 463 IPR036638 GO:0046983
Gma13g03159 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 460 IPR036638 GO:0046983
Gma13g03159 496 SMART finulus 401 450 IPR011598 GO:0046983
Gma13g03159 496 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 493 IPR045843 GO:0003700|GO:0006355
Gma13g03159 496 Pfam Helix-loop-helix DNA-binding domain 405 444 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03159 Gma-Chr13 45714516 45716483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03159 159 487 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.852 1.66e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g03159 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03159 - - gmx:100778004 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03159 13 45714516 45716483 Gma13g03159 13 45714516 45716483 ECH
Gma13g03159 13 45714516 45716483 Gma15g00208 15 1795858 1797195 GST
Gma13g03159 13 45714516 45716483 Gma07g00127 07 1078402 1080274 PCT
Gma13g03159 13 45714516 45716483 Gma08g01824 08 16278854 16280847 PCT
Gma07g00127 07 1078402 1080274 Gma13g03159 13 45714516 45716483 PCT
Gma08g01824 08 16278854 16280847 Gma13g03159 13 45714516 45716483 PCT